Post date: Aug 13, 2014 2:42:2 PM
My attempt at variant calling stalled after finishing the following linkage groups:
1, 2, 4, 5, and 8
The results are in /home/A01963476/data/timema/timema_wgrs/assembliesExperiment/variants.vcf (there isn't a *vcf.idx file, but I don't think I will need this).
I am running the rest on LG at a time, and each will be in a variantsLG*.vcf file. Here are the ones I have finished or running,
10, 3, 6, 7, 9, 11, 12, 13