Post date: May 22, 2017 3:47:30 PM
21-22v16. Going through Megan's .xls files to look for errors. I'm making sure the file names have three letter codes, are the same length (we will add a 0 to the numbers that don't have three digits after the "-"). We are getting rid of mac line endings on the files Megan had to manipulate (adding a 0 or NA for absent elements).
Example of making a shortcut of files on desktop so I can run R on my Desktop:
>ln -s ~/Dropbox/LKL_backup/wings/mapping/mod_meas/GNP/GNP* ./
Using the following to combine measurements for all individuals in a file:
>perl combine_meas-mapping.pl *xls
Megan did her second round of repeatability with some SIN individuals. I dropped out the "b" measurements from the dataset (because they were so similar to the "a" ones and one of the "a" ones had correct "NAs" instead of "0s" in a "b" one). There were also a couple individuals that had measurements for right and left hindwing. I just kept one.
By the way, we never officially analyzed Megan's SIN repeatability data. Do this for the paper?
I had to drop two individuals from YBG. One file wasn't given a name, the other was a name of an individual that isn't in our genetic dataset.
Sample sizes can be found in mapping-n.xlsx. I will give Megan a few more wings to photograph and measure over the summer.