Post date: Aug 30, 2014 11:4:17 PM
Here is the info on the significant SNP from the C LMM analysis:
Snp# chr rs ps n_miss beta se l_remle l_mle p_wald p_lrt p_score
1318189 502177 lg12_ord41_scaf407 407 0 0.5114373 0.07993534 0.001 0.001 8.019363e-10 6.608346e-10 1.052721e-08