sequenceAlignment_variantcalling

Refer to the page alignments for latest details of variant calling using bwa mem. The page redoingvariantcalling_bwamem has details for why I chose to do this. The variant calling will be collapsed into alignments_variantcalling page soon. That page gives details of bwa aln variant calling.

To do:

• 1. sam to bam

  2. variant calling

  3. prepare stuff for baypass