Post date: Jan 19, 2015 6:40:55 PM
I think it is important to run all CV analyses together so that one ends up with the same data subsets. So, I am redoing this, but with shorter runs (4000 MCMC 200 burnin per CV set and scale = 100,000 cycles):
cd /local/scratch/
popanc -o outcvF_r9f0.3gen_demog_gens10.hdf5 -m 4000 -b 2000 -t 4 -f 1 -w 0 -v 1 -c 0.1,0.5,1,5,10 /labs/evolution/projects/popanc_sims/sims/genoP0F_r9f0.3gen_demog_gens10.txt /labs/evolution/projects/popanc_sims/sims/genoP1F_r9f0.3gen_demog_gens10.txt /labs/evolution/projects/popanc_sims/sims/genoAdmxF_r9f0.3gen_demog_gens10.txt > /labs/evolution/projects/popanc_sims/mcmc.cv/cvF_r9f0.3gen_demog_gens10
scp outF_r9f0.3gen_demog_gens10.hdf5 /labs/evolution/projects/popanc_sims/mcmc.cv/