comparative genome alignment - Mar 20, 2015 6:31:50 PM
density phylogenetic trees - Mar 20, 2015 11:6:19 PM
alignment of GBS for ancestry inference to melissa genome - Apr 28, 2016 9:9:18 PM
variant calling and filtering for Lycaeides ancestry inference - Apr 29, 2016 7:7:5 PM
splitting variants, making gl files, and running entropy - May 03, 2016 8:32:53 PM
re-reunning entropy with autosomal SNPs - Jun 01, 2016 7:44:48 PM
population allele frequencies - Jun 01, 2016 9:10:37 PM
test runs of popanc with autosomal data - Jun 01, 2016 10:26:18 PM
initial popanc analyses with Z (23) chromosome - Jun 04, 2016 3:41:34 AM
summaries of popanc results - Jun 06, 2016 9:43:31 PM
a few popanc runs to look at local ancestry blocks within individuals - Jun 13, 2016 5:30:14 PM
additional popanc runs with alternative source/reference populations - Oct 09, 2016 6:3:11 PM
popanc, sex chromosome runs with local ancestry - Oct 10, 2016 5:33:52 PM
alignment of whole genomes to melissa genome, variant calling with GATK's HC - Oct 18, 2016 9:52:6 PM
Lycaeides whole genome variant filtering - Oct 28, 2016 4:11:45 AM
Lycaeides whole genome SNP phylogeny - Oct 30, 2016 7:2:25 PM
Trees for 1000 bp SNP windows - Nov 01, 2016 10:58:54 PM
Dxy for Lycaeides genomes, correlations, autocorrelations, evidence of hybridization and ancestry blocks - Nov 03, 2016 2:24:47 AM
visualization of the linkage map - Nov 15, 2016 3:54:3 AM
entropy runs to infer local ancestry frequencies at ancestry informative markers - Jan 02, 2017 6:13:58 PM
Ancestry frequencies with 3 and 7 bp windows for popanc lda - Feb 13, 2017 4:33:50 PM
Main ancestry frequency analyses for Lycaeides genome admixture - Apr 04, 2017 4:31:23 PM
Some notes on testing for genetic background by gene interactions (epistasis) - Apr 05, 2017 8:10:36 PM
Summary of popanc AIM results - May 09, 2017 11:7:20 PM
Z chromosome 1000 SNP trees - May 15, 2017 5:54:3 PM
F4 tests - Sep 04, 2017 9:37:58 PM
Redoing whole genome alignments to the dovetail genome - May 01, 2019 8:28:4 PM
Lycaeides whole genomes, variant filtering and formatting for phylogenetics - May 01, 2019 9:12:44 PM
Lycaeides whole genome phylogenetics with Doevtail reference genome - May 01, 2019 9:23:15 PM
Lycaeides whole genome phylogenetics with Doevtail reference genome, take 2 - May 08, 2019 4:23:26 PM