Post date: May 27, 2014 9:46:53 PM
See for new protocols: https://sites.google.com/site/gompertlabnotes/home/lab-protocols/slurm
Also, for qsub submissions, go to bottom of file and comment out and add new line:
open QSUB, "> sub.sh" or die "Failed to write sub.sh\n";
#open QSUB, "| qsub 1>/dev/null" or die "Failed to fork for qsub; $!";
Also, add new line after "close(QSUB)":
system "qsub sub.sh\n";
Also, when using wrap_qsub_rc_bwa.pl in the future, start with the one in the heterelmis directory.