Hi Sam,
Here are the paths you want.
The genome is here:
/uufs/chpc.utah.edu/common/home/u6000989/data/callosobruchus/genome_lucigen/cmacgenome.fasta
The raw RNA sequences from our transcriptome are here:
/uufs/chpc.utah.edu/common/home/u6000989/data/callosobruchus/RNAseq20151015/
Karen did assemble these and perform some analyses, but this was several
years ago, so it might be worth redoing the assembly anyway.
We have data from one of the other published transcriptomes here
/uufs/chpc.utah.edu/common/home/u6000989/data/callosobruchus/transcriptomeSayadi16
But there is at least one other one published.
It also looks like I was just starting to think about annotations for
this genome back in summer 2016. I got a few things together, but didn't
get very far. What I had at the time is here:
/uufs/chpc.utah.edu/common/home/u6000989/data/callosobruchus/genome_lucigen/Annotation
Let me know if you have any questions.
Cheers,
Zach