Summary from Patrik, getting at evolution of color genetic arch. - Nov 16, 2017 3:31:30 PM
LD among top color PIP SNPs in chumash - Nov 16, 2017 3:47:57 PM
No. of QTN in the indel and mel-stripe, 8 of 10 species - Nov 19, 2017 3:3:2 AM
Timema, number of color QTL/QTN based on lateral color - Nov 21, 2017 12:9:35 AM
Genetic differentiation for candidate color genes, chumash vs. podura - Nov 21, 2017 5:22:11 PM
GEBVs and G-matrix for Timema color traits - Dec 03, 2017 4:14:59 PM
Color locus heterozygosity - Dec 05, 2017 9:39:39 PM
Color overlap - Jan 31, 2018 10:28:59 PM
defining the indel - Feb 22, 2018 12:4:22 AM
defining the indel, update - Mar 14, 2018 9:8:26 PM
delimiting the inversion - Mar 26, 2018 11:41:20 PM
Intermediate color selection experiment - May 16, 2018 10:45:26 PM
Second (2019) T. chumash experiment, selection gradient analysis - Jul 20, 2019 2:11:22 AM
Sequence data, 2019 redwood experiment plus - Aug 13, 2019 2:51:37 AM
Variant filtering and genotype estimation for T. cristinae to identify green homozygote - Aug 19, 2019 10:16:0 PM
Revised figures and code for the new indel focused Timema paper - Sep 05, 2019 4:32:34 PM
Alignment and variant calling for the 2019 T. chumash experiment GBS data - Sep 11, 2019 10:18:4 PM
Variant filtering and genotype inference with Timema chumash 2019 experiment - Sep 17, 2019 8:2:16 PM
BSLMM analyses for color and survival in T. chumash 2019 experiment - Sep 18, 2019 6:23:30 PM
T. chumash 2019 GBS, realignment and varianct call with melanic genome - Sep 18, 2019 6:30:42 PM
T. chumash gemma preliminary results with stripe genome - Sep 19, 2019 2:46:57 AM
Quantifying host color space filling by Timema - Sep 20, 2019 8:3:39 PM
BSLMM analyses for color and survival in T. chumash 2019 experiment-melanistic reference genome - Sep 23, 2019 8:32:34 PM
Connecting color-associated SNPs with survival in the Timema chumash 2019 experiment - Sep 26, 2019 7:43:39 PM
Modeling expected fitness in the T. chumash experiment - Oct 11, 2019 10:46:27 PM
Calculating approximate selection gradients from glm regression coefficients - Oct 14, 2019 7:41:14 PM
Visualizing the chumash fitness landscape with igraph - Oct 14, 2019 10:11:9 PM
Null simulations, expected selection gradients for T. chumash - Oct 15, 2019 5:6:1 PM
Bayesian ridge and lasso, comparison with Bayesian model averaging for T. chumash experiment - Oct 15, 2019 5:14:43 PM
Test for epistasis affecting color in chumash with MAPIT - Oct 23, 2019 11:9:58 PM
Mapping color in gemma with epistatic effects from mapit - Oct 25, 2019 11:38:12 PM
Chumash color mapping CV with and w/o epistasis - Oct 27, 2019 2:18:47 AM
T. chumash, selection gradients on GEBVs - Oct 31, 2019 3:39:9 AM
Alignments of Timema genomes versus melanic version 3 - Nov 22, 2019 7:55:21 PM
Processing alignments and variant calling for Timema genomes against the melanic version 3 reference - Nov 27, 2019 3:15:39 AM
Searching for the deleted color locus in the green and stripe genomes - Dec 02, 2019 3:27:22 AM
Coverage from whole genomes Ecol. Letters across scaffold 128 - Dec 05, 2019 8:28:14 PM