Post date: Jun 15, 2017 2:49:12 AM
14vi17.
plotPipLgs.R
LgPipPlots.pdf
There's a lot going on here. Some traits have more QTL on some chromosomes than others. If I use one of these in the talk, it could be just to point on the fact that we have linkage groups and that most of our traits are polygenic...
15v17. ZG is going to make new plots that spread out the 23 chromosomes evenly and make LG's equal size (QTL/SNP) so that interesting patterns will be those that are different than a flatline.
LgPipPlotsStan.pdf
Here is the centered (so that all traits x group combos have a mean of 0) LG plot. I think it might be the coolest one, some neat patterns.
/uufs/chpc.utah.edu/common/home/u6000989/projects/lycaeides_wings/Gemma/combined_output/LgPipPlotsStanC.pdf