Post date: Aug 21, 2020 7:46:41 PM
I started a run yesterday but got this error:
Can't locate Parallel/ForkManager.pm in @INC (@INC contains: /usr/local/lib64/perl5 /usr/local/share/perl5 /usr/lib64/perl5/vendor_perl /usr/share/perl5/vendor_perl /usr/lib64/perl5 /usr/share/perl5 .) at RunBeast.pl line 7.
BEGIN failed--compilation aborted at RunBeast.pl line 7.
I try installing the fork manager:
cpan Parallel::ForkManager
[u6028866@kp301 run4]$ sbatch RunBeast.sh
Submitted batch job 8545622
Did not work again.
This this command to install the ForkManager:
perl -MCPAN -e 'install Parallel::ForkManager'
But:
make: *** [pure_site_install] Error 13
YANICK/Parallel-ForkManager-2.02.tar.gz
/usr/bin/make install -- NOT OK
----
You may have to su to root to install the package
(Or you may want to run something like
o conf make_install_make_command 'sudo make'
Now I set the PERL5LIB in my .bash_profile (PERL5LIB="/uufs/chpc.utah.edu/common/home/u6028866/perl5/lib/perl5"; export PERL5LIB) and run again:
[u6028866@kp293 run4]$ sbatch RunBeast.sh
Submitted batch job 8545735
Fingers crossed as it has not thrown an error yet.
squeue -u u6028866 -j 8545735 -l
I think it is running!
Sat Aug 22 09:14:00 2020
JOBID PARTITION NAME USER STATE TIME TIME_LIMI NODES NODELIST(REASON)
8545735 gompert-k beast u6028866 RUNNING 14:34:44 4-00:00:00 1 kp293