Post date: Apr 26, 2017 3:5:39 AM
25iv17. ZG is parsing the barcodes for Tx State lib 10 just like he did for the other Tx State libraries, on the UofU CHPC.
Submission script:
#!/bin/sh
#SBATCH --time=96:00:00
#SBATCH --nodes=1
#SBATCH --ntasks=8
#SBATCH --account=gompert-kp
#SBATCH --partition=gompert-kp
#SBATCH --job-name=parse_seq
#SBATCH --mail-type=FAIL
#SBATCH --mail-user=zach.gompert@usu.edu
echo ------------------------------------------------------
echo SLURM: job identifier is $SLURM_JOBID
echo SLURM: job name is $SLURM_JOB_NAME
echo ------------------------------------------------------
cd
/uufs/chpc.utah.edu/common/home/u6000989/data/lycaeides/lycaeides_gbs/Sequences/SA13102/Project_JA13216
perl ../../../Scripts/parse_barcodes768.pl
../../../Barcodes/TxState_lib10_BARCODES.csv
TXState10_NoIndex_L001_R1_001.fastq
early()
{
echo ' '
echo ' ############ WARNING: EARLY TERMINATION ############# '
echo ' '
}
exit
---
I will get an account for UofU CHPC soon.
Up next: see which Lyc samples have already been aligned to the genome and whether the parameters used were the same. I will at least need to align lib 10 samples to the genome.