Post date: Dec 12, 2014 11:13:51 PM
I am trying to map strip with the 500 genomes, just to make sure everything is ok. I am using the dataset with maf > 5% and running 20 chains for each host (though I guess I could combine hosts, but I will check these results first).
cd /local/scratch/
mkdir maf05strtimemaC19
cd maf05strtimemaC19
sleep 95
pimass-lin -g /home/A01963476/projects/timema_wgexperiment/gemma/maf0.05geno_timemaC.txt -p /home/A01963476/projects/timema_wgexperiment/gemma/pheno_stripesamplesC.txt -w 2000000 -s 5000000 -num 5000 -o pimass_timemaCrep19 -cc
cd ..
rsync -avz maf05strtimemaC19 /home/A01963476/projects/timema_wgexperiment/gemma/output_pimassMaf5str/