Post date: Jun 10, 2017 3:40:27 AM
Here is the path to the breeding values for all:
/uufs/chpc.utah.edu/common/home/u6000989/projects/lycaeides_wings/Gemma/output_all/bv_all_size.txt
/uufs/chpc.utah.edu/common/home/u6000989/projects/lycaeides_wings/Gemma/output_all/bv_all_coord.txt
Note that you have one file for size and one for coordinates. Each has one individual per row (hence the need for two files as sample sizes differ) and one column per phenotype (in order). You can treat these the same as your phenotypic matrixes.
And here is the path for all of the sub-group breeding value files:
/uufs/chpc.utah.edu/common/home/u6000989/projects/lycaeides_wings/Gemma/output_grps/bv*