Post date: Nov 29, 2019 8:16:54 PM
The current version of gatk on the cluster is 3.8-0-ge9d806836.
the oldest version is 2.6 but I consider this too old.
We are currently testing the latest version (4.0).
The Java version currently installed on the cluster is from 2016.
I would like to try Java 1.6x with Mutect.
Thispaperuses gatk version 3.0 with mutect and deals with exome data.
A lot of really cool link info about mutect functions for each version.
This is the paper they refer in the above link for version M1 of mutect.
Very relevant post if mutect1 works.
Les conseils de Zach pour une thèse:
- keep reading, create a reading group
- have fun doing what you are doing, and do these things first. Things with deadlines will get done.
- research is so much work that you should have fun doing it, otherwise it is just going to be work.
- take a few papers and go in a place without internet, try to understand them very well to get familiar with a field.
- dedicate part of the day to things you enjoy, the other part to obligations.