Post date: Mar 22, 2015 7:40:21 PM
Before going all in, I am trying two of the replicates for 20, 50, and 200 generations. Here is an example command. The results will be in /labs/evolution/projects/popanc_sims/mcmc/.
cd /local/scratch/
popanc -o estpanc_demogGens50Rep3Chain1.hdf5 -m 20000 -b 5000 -t 5 -n 3 -d 10 -s 1 -u 10 -l 0.1 -a 1 -z 1 /labs/evolution/projects/popanc_sims/sims/genoP0F_r3gen_demog_gens50.txt /labs/evolution/projects/popanc_sims/sims/genoP1F_r3gen_demog_gens50.txt /labs/evolution/projects/popanc_sims/sims/genoAdmxF_r3gen_demog_gens50.txt > /labs/evolution/projects/popanc_sims/mcmc/log_estpanc_demogGens50Rep3Chain1
scp estpanc_demogGens50Rep3Chain1.hdf5 /labs/evolution/projects/popanc_sims/mcmc/