Post date: May 12, 2015 8:33:13 PM
Whole genome comparative alignment complete. Results are in a maf file in /labs/evolution/data/lycaeides/whole_genomes/mugsyGenomeAlgns/mugsy. Here is a description of the file format (maf).
Need to compute a consensus sequence, see this.
Number of alignments with 1, 2, ..., all 6 taxa
1009426 1
59338 2
50689 3
55774 4
78295 5
126836 6