Post date: Mar 10, 2020 2:48:15 PM
Genetic distances:
Based on genotypes (AA,AB,BB) (convert probabilities into letters?)
- Euclidian
- AMOVA (for several alleles)
- Bray-curtis (gstudio - uses allele counts at each loci)
gstudio is a package for genetic analyses in R
Read this next: https://dyerlab.github.io/applied_population_genetics/distance-matrices.html
generate distance matrices
Nei's distance (https://www.genetics.org/content/genetics/89/3/583.full.pdf)