Post date: Dec 18, 2013 5:2:45 PM
There are two additional lanes of illumina sequence data for the Timema mapping families. These are in data/timema/timema_mappingfams/NCGR (run999 and run1000). I am parsing barcodes for these data with the barcode file in data/timema/timema_mappingfams/timema_linkmap (which I recently copied from node5). I think this directory also contains the misplaced raw sequence data fro the first lane of mapping family sequencies (trimmed_T1_all.fastq). The parsed reads will initially be written into the same directories as the raw reads.