Post date: Dec 10, 2014 9:14:19 PM
10Dec14: The TxState VPN isn't working and I tried multiple browsers and computers. It's getting hung up on the "Establishing secure session..." step via Network Connect. Kate gave me the idea to log on to the star cluster and getting at greenhouse that way, which doesn't require the VPN. It works:
ssh ll1113@star.tr.txstate.edu
password is my net ID password
Then ssh llucas@147.26.169.195
I'm copying SpcalcFst_source.R and the 8 allele frequency files with two columns (2col*) to star. Then ZG will download them to his computer to run. His computer should have enough memory to run this. Don't forget to delete these files off of star when done.
11Dec14: The chains had to be thinned to run the R script on ZG's computer. He thinned them by 1/4 (retained 1/4 of the samples, 500 samples/chain). Used R script in nmds_11dec14.R to make joint plot, see attached.