Timema genome

recomb too high, revised-5ix13 - Sep 05, 2013 4:57:3 PM

finally some progress with recomb-5ix13 - Sep 05, 2013 10:0:59 PM

timema genome clustering by linkage groups version 0 - Sep 06, 2013 8:12:4 PM

timema linkage groups - Sep 09, 2013 11:23:47 PM

timema linkage groups continued - Sep 10, 2013 4:35:44 PM

working linkage groups - Sep 10, 2013 6:54:54 PM

timema genome v 0.2 - Sep 12, 2013 8:17:35 PM

preparing for reference assemblies - Sep 12, 2013 11:39:24 PM

reference assemblies, plates 5 and 6 - Sep 13, 2013 3:35:24 PM

compressing, sorting and indexing alignments for plates 5 & 6 - Sep 16, 2013 6:51:9 PM

merging alignments for plates 5 and 6 - Sep 17, 2013 6:20:25 PM

variant calling natural populations, step 1 - Sep 17, 2013 9:17:5 PM

variant calling, step 2 - Sep 30, 2013 12:13:9 AM

genotype and allele frequency estimation - Sep 30, 2013 9:59:23 PM

timema whole genome Fst - Oct 03, 2013 8:14:24 PM

timema whole genome Fst, parallelism - Oct 04, 2013 5:10:36 PM

parallelism or the lack there of in timema - Oct 24, 2013 6:44:0 PM

parallelism cont. - Oct 24, 2013 6:45:49 PM

hidden markov model to identify regions of high genetic differentiation - Nov 04, 2013 4:57:22 PM

parallelism based on binary classification of high and normal fst loci - Nov 06, 2013 4:35:44 PM

hmm, parameters (partially) estimated from the data - Nov 06, 2013 4:37:14 PM

summary of HMM three-state model results - Nov 07, 2013 7:53:39 PM

comparison of parallel differentiation and bgsr - Nov 13, 2013 5:33:41 PM

sex chromosomes (or the lack thereof) - Nov 14, 2013 11:26:27 PM

High genetic differentiation regions and allele frequency change in experimental populations - Nov 18, 2013 9:43:20 PM

parallel divergent change and parallel high genetic differentiation - Nov 19, 2013 8:48:59 PM

sex chromsome search, take 2 - Nov 26, 2013 6:6:53 PM

new data for the mapping families - Dec 18, 2013 5:2:45 PM

splitting fastq files - Dec 18, 2013 10:40:50 PM

aligning new mapping family data - Dec 19, 2013 4:45:59 PM

compressing, sorting and indexing new mapping families - Jan 04, 2014 10:30:58 PM

error, redo - Jan 04, 2014 10:44:2 PM

alignment for structural varian paired-end reads - Jan 04, 2014 11:14:14 PM

compressing, sorting and indexing sv data - Jan 06, 2014 11:12:30 PM

filtering SV alignments - Jan 08, 2014 11:32:22 PM

size of HMM regions in bp - Jan 22, 2014 4:3:30 PM

size of HMM regions continued - Jan 22, 2014 8:45:48 PM

merging mapping family alignments and variant calling - Feb 25, 2014 5:40:59 PM

variant calling for merged mapping families - Feb 27, 2014 4:47:58 PM

recombination estimates with the merged families - Mar 01, 2014 12:1:20 AM

linkage groups with the new mapping family data - Mar 04, 2014 10:34:48 PM

SNP-based analyses for Timema genome paper revision - Mar 17, 2014 7:7:40 PM

timema revisions, non-parallel divergence SNPs for enrichment - Mar 18, 2014 10:0:9 PM

alternative approach to define LG's - Apr 08, 2014 4:50:6 PM

genome from Dovetail and new LGs - Mar 24, 2016 10:11:50 PM

mugsy to compare Dovetail and original T. cristinae genomes - Mar 25, 2016 9:55:10 PM

Second dovetail assembly - Jun 07, 2016 10:19:4 PM

T. cristinae llinkage map with LM2 and 2nd Dovetail assembly - Jun 13, 2016 3:14:20 AM

Note from Patrik on mapping families - Jun 28, 2016 10:25:43 PM

T. cristinae sex chromsome, depth and Dovetail - Jun 29, 2016 10:42:37 PM

whole genome alignment original T. cristinae genome vs. dovetail 2 - Jun 29, 2016 10:55:35 PM

Timema cristinae Dovetail genome 2 linkage map - Jun 30, 2016 8:19:3 PM

splitting scaffold 702 and creating genome version 1.3 - Sep 25, 2016 3:54:23 AM

Comparative genome alignment of T. cristinae green vs. dark morphs - Sep 26, 2016 1:46:51 AM

Comparative genome alignment of T. cristinae dark vs. green de novo - Dec 27, 2016 10:5:38 PM

visualization of comparative alignments, orientation of scaffolds - Dec 30, 2016 4:4:34 AM

alignment of mapping families to green morph genome - Jan 24, 2017 6:32:32 PM

first pass at comparative ordering and oreitnation of LG8 - Jan 27, 2017 4:8:5 PM

comparative mapping and orientation of LG8 with green genome - Feb 04, 2017 7:43:13 PM

defining mel and stripy based on the dovetail genomes and mapping families - Mar 02, 2017 6:11:22 PM