############ PREDICTABILITY AIMS 3 ################
### top 10% stats
############## high alpha ######################
### shared
obs_ha
[1] 22
> p_ha
[1] 7e-04
> xfold_ha
[1] 1.909076
å
## Z
obs xfold p
[1,] 12 2.827388 3e-04
### autosomes
obs xfold p
[1,] 24 1.345133 0.0697
############## low alpha ######################
### shared
obs_la
[1] 9
> p_la
[1] 0.8367
> xfold_la
[1] 0.7841634
## Z
obs xfold p
[1,] 2 1.159891 0.5446
### autosomes
cbind(obs, xfold, p)
obs xfold p
[1,] 3 0.3204615 0.998
############## high beta #######################
### shared
obs_hb
[1] 46
> p_hb
[1] 0
> xfold_hb
[1] 3.974357
## Z
obs xfold p
[1,] 34 3.850161 0
### autosomes
cbind(obs, xfold, p)
obs xfold p
[1,] 21 2.240741 3e-04
## comparing anctop with alpha low
obs_hl
[1] 6
> p_hl
[1] 0.9833
> xfold_hl
[1] 0.5200073
## comparing anclo with alpha top
obs_lh
[1] 27
> p_lh
[1] 0
> xfold_lh
[1] 2.33457
##### AIMS3 SNPS ###############
## top SNPs for each category
############## high alpha ######################
### shared
scaffold position ancmean ancfold alpha beta
75 11 6234637 0.8202638 0.8202638 3.063075 -1.719500
124 11 15712950 0.8051687 0.8051687 2.803425 -1.313115
230 503 6014039 0.8174782 0.8174782 1.837880 -2.188295
290 833 6668579 0.8389399 0.8389399 1.389935 0.646060
435 1631 1200324 0.8464101 0.8464101 1.671420 -2.242920
443 1631 2570345 0.8654385 0.8654385 2.604465 -2.318290
447 1631 4238526 0.7859913 0.7859913 2.440705 -2.738040
519 1631 9958857 0.7880782 0.7880782 1.825720 -2.030065
520 1631 10080421 0.8680071 0.8680071 2.242000 -2.517495
521 1631 10080466 0.8008090 0.8008090 1.428065 0.993690
561 1631 12954191 0.8347231 0.8347231 2.729530 -1.442750
574 1631 14218357 0.8697449 0.8697449 1.960860 -2.144705
577 1631 14760795 0.8824504 0.8824504 2.660535 -0.329510
586 1631 15408704 0.8155701 0.8155701 1.891755 -1.983630
589 1631 15428179 0.8808474 0.8808474 2.508905 -1.108765
624 1631 20910914 0.8331848 0.8331848 1.474770 0.849885
656 1632 6146628 0.8258151 0.8258151 2.411550 -2.755130
765 1639 8378132 0.7854263 0.7854263 1.518665 -1.057850
789 1639 13668785 0.8445665 0.8445665 1.377010 0.137320
865 1641 9384153 0.8423791 0.8423791 1.597340 -1.339335
906 1642 9023853 0.7958218 0.7958218 1.569945 -2.344570
1156 1648 13426790 0.8020397 0.8020397 1.401665 -2.453990
## Z
scaffold position ancmean ancfold alpha beta
435 1631 1200324 0.8464101 0.8464101 1.671420 -2.242920
443 1631 2570345 0.8654385 0.8654385 2.604465 -2.318290
447 1631 4238526 0.7859913 0.7859913 2.440705 -2.738040
519 1631 9958857 0.7880782 0.7880782 1.825720 -2.030065
520 1631 10080421 0.8680071 0.8680071 2.242000 -2.517495
521 1631 10080466 0.8008090 0.8008090 1.428065 0.993690
561 1631 12954191 0.8347231 0.8347231 2.729530 -1.442750
574 1631 14218357 0.8697449 0.8697449 1.960860 -2.144705
577 1631 14760795 0.8824504 0.8824504 2.660535 -0.329510
586 1631 15408704 0.8155701 0.8155701 1.891755 -1.983630
589 1631 15428179 0.8808474 0.8808474 2.508905 -1.108765
624 1631 20910914 0.8331848 0.8331848 1.474770 0.849885
### autosomes
scaffold position ancmean ancfold alpha beta
75 11 6234637 0.8202638 0.8202638 3.063075 -1.719500
94 11 10353912 0.7511107 0.7511107 2.655575 -2.467345
124 11 15712950 0.8051687 0.8051687 2.803425 -1.313115
158 228 8202566 0.7642141 0.7642141 1.421170 -1.577615
230 503 6014039 0.8174782 0.8174782 1.837880 -2.188295
288 833 6555012 0.7565314 0.7565314 1.297705 -0.762725
290 833 6668579 0.8389399 0.8389399 1.389935 0.646060
656 1632 6146628 0.8258151 0.8258151 2.411550 -2.755130
657 1632 6955044 0.7651464 0.7651464 1.883500 -1.991485
691 1636 9395014 0.7512625 0.7512625 1.398020 -2.205425
722 1638 1613360 0.8198088 0.8198088 1.309100 -1.949970
765 1639 8378132 0.7854263 0.7854263 1.518665 -1.057850
789 1639 13668785 0.8445665 0.8445665 1.377010 0.137320
865 1641 9384153 0.8423791 0.8423791 1.597340 -1.339335
900 1642 8344495 0.7694327 0.7694327 1.632055 -1.987565
906 1642 9023853 0.7958218 0.7958218 1.569945 -2.344570
911 1642 10326736 0.7452607 0.7452607 1.904825 -2.344020
984 1645 2075187 0.7785971 0.7785971 2.361620 -1.422265
1150 1648 12113614 0.7883211 0.7883211 1.348690 0.053430
1156 1648 13426790 0.8020397 0.8020397 1.401665 -2.453990
1158 1648 13619133 0.7831686 0.7831686 1.520025 -1.432450
############## low alpha ######################
### shared
scaffold position ancmean ancfold alpha beta
380 1628 10120991 0.2011989 0.7988011 -1.455180 0.310015
423 1631 520759 0.2001525 0.7998475 -1.508925 0.135350
434 1631 1171652 0.1669807 0.8330193 -1.634175 0.306900
659 1632 8419694 0.2326689 0.7673311 -1.375540 0.392050
660 1632 8419712 0.2383211 0.7616789 -1.478640 0.513350
853 1641 6446919 0.2368265 0.7631735 -1.944210 0.259360
921 1642 12252816 0.1764152 0.8235848 -1.427505 0.523450
1011 1645 9480614 0.2306346 0.7693654 -1.721280 0.479085
1064 1646 10245305 0.1077859 0.8922141 -2.091715 0.349320
## Z
scaffold position ancmean ancfold alpha beta
423 1631 520759 0.2001525 0.7998475 -1.508925 0.13535
434 1631 1171652 0.1669807 0.8330193 -1.634175 0.30690
### autosomes
scaffold position ancmean ancfold alpha beta
380 1628 10120991 0.2011989 0.7988011 -1.455180 0.310015
921 1642 12252816 0.1764152 0.8235848 -1.427505 0.523450
1064 1646 10245305 0.1077859 0.8922141 -2.091715 0.349320
############## high beta #######################
### shared
scaffold position ancmean ancfold alpha beta
36 4 12406546 0.8655752 0.8655752 -1.038110 0.946095
37 4 12406549 0.8470202 0.8470202 -1.015625 0.784830
290 833 6668579 0.8389399 0.8389399 1.389935 0.646060
393 1628 12893859 0.8392919 0.8392919 -0.230180 0.585385
446 1631 4238467 0.8719080 0.8719080 0.321960 1.426365
458 1631 5365561 0.8216006 0.8216006 -0.043165 1.475075
459 1631 5516528 0.8518275 0.8518275 1.183740 0.844165
470 1631 6146721 0.8703201 0.8703201 0.171945 1.422015
491 1631 7688497 0.8365471 0.8365471 -0.080525 1.005340
515 1631 9616373 0.8523427 0.8523427 1.324660 0.995110
552 1631 12342151 0.8243192 0.8243192 -0.060940 1.195390
569 1631 13728571 0.8813712 0.8813712 0.276345 1.795720
570 1631 13908210 0.8820752 0.8820752 0.695930 1.726930
573 1631 14175992 0.8466127 0.8466127 0.292360 1.865905
578 1631 14799474 0.8841897 0.8841897 -0.428110 1.536485
580 1631 15003188 0.8344826 0.8344826 0.753010 2.209130
581 1631 15044549 0.8212428 0.8212428 0.025770 1.547860
588 1631 15428102 0.8815380 0.8815380 -0.147435 1.643840
597 1631 16563238 0.8826018 0.8826018 -0.260430 1.638545
598 1631 16563245 0.8810752 0.8810752 -0.292355 1.731235
599 1631 16742878 0.8720116 0.8720116 0.816895 0.726895
603 1631 17266869 0.8785557 0.8785557 -0.005530 1.209330
610 1631 18504663 0.8442752 0.8442752 0.107440 1.437290
624 1631 20910914 0.8331848 0.8331848 1.474770 0.849885
631 1631 21250737 0.8581169 0.8581169 -0.285735 0.666150
632 1631 21250758 0.8802395 0.8802395 -0.414765 0.663585
633 1631 21303464 0.8724689 0.8724689 0.286455 0.732010
766 1639 8438185 0.8712293 0.8712293 -0.024325 1.170570
905 1642 9017721 0.8530617 0.8530617 0.085685 0.781090
1071 1646 12073166 0.8347357 0.8347357 -0.961980 0.754850
1072 1646 12073190 0.8358223 0.8358223 -1.060320 0.757885
## Z
scaffold position ancmean ancfold alpha beta
446 1631 4238467 0.8719080 0.8719080 0.321960 1.426365
458 1631 5365561 0.8216006 0.8216006 -0.043165 1.475075
459 1631 5516528 0.8518275 0.8518275 1.183740 0.844165
470 1631 6146721 0.8703201 0.8703201 0.171945 1.422015
491 1631 7688497 0.8365471 0.8365471 -0.080525 1.005340
515 1631 9616373 0.8523427 0.8523427 1.324660 0.995110
552 1631 12342151 0.8243192 0.8243192 -0.060940 1.195390
569 1631 13728571 0.8813712 0.8813712 0.276345 1.795720
570 1631 13908210 0.8820752 0.8820752 0.695930 1.726930
573 1631 14175992 0.8466127 0.8466127 0.292360 1.865905
578 1631 14799474 0.8841897 0.8841897 -0.428110 1.536485
580 1631 15003188 0.8344826 0.8344826 0.753010 2.209130
581 1631 15044549 0.8212428 0.8212428 0.025770 1.547860
588 1631 15428102 0.8815380 0.8815380 -0.147435 1.643840
597 1631 16563238 0.8826018 0.8826018 -0.260430 1.638545
598 1631 16563245 0.8810752 0.8810752 -0.292355 1.731235
599 1631 16742878 0.8720116 0.8720116 0.816895 0.726895
603 1631 17266869 0.8785557 0.8785557 -0.005530 1.209330
610 1631 18504663 0.8442752 0.8442752 0.107440 1.437290
624 1631 20910914 0.8331848 0.8331848 1.474770 0.849885
631 1631 21250737 0.8581169 0.8581169 -0.285735 0.666150
632 1631 21250758 0.8802395 0.8802395 -0.414765 0.663585
633 1631 21303464 0.8724689 0.8724689 0.286455 0.732010
### autosomes
scaffold position ancmean ancfold alpha beta
36 4 12406546 0.8655752 0.8655752 -1.038110 0.946095
37 4 12406549 0.8470202 0.8470202 -1.015625 0.784830
74 11 6227815 0.8209992 0.8209992 -1.471100 0.467355
87 11 8117866 0.8088417 0.8088417 0.367170 1.133315
290 833 6668579 0.8389399 0.8389399 1.389935 0.646060
323 1095 6687151 0.8539380 0.8539380 -0.623250 0.493565
393 1628 12893859 0.8392919 0.8392919 -0.230180 0.585385
766 1639 8438185 0.8712293 0.8712293 -0.024325 1.170570
773 1639 10026163 0.8090146 0.8090146 -0.779120 0.651185
863 1641 9383474 0.8436300 0.8436300 -0.999410 0.499730
864 1641 9383477 0.8439497 0.8439497 -0.981405 0.507075
903 1642 8978175 0.8431325 0.8431325 1.076330 0.552985
905 1642 9017721 0.8530617 0.8530617 0.085685 0.781090
921 1642 12252816 0.1764152 0.8235848 -1.427505 0.523450
1071 1646 12073166 0.8347357 0.8347357 -0.961980 0.754850
1072 1646 12073190 0.8358223 0.8358223 -1.060320 0.757885
## comparing anctop with alpha low
scaffold position ancmean ancfold alpha beta
74 11 6227815 0.8209992 0.8209992 -1.471100 0.467355
555 1631 12488537 0.8683090 0.8683090 -1.394445 0.442175
783 1639 12748595 0.7898340 0.7898340 -1.463105 0.771215
902 1642 8965217 0.8544414 0.8544414 -1.516280 0.388085
1016 1645 10123469 0.8772197 0.8772197 -1.371435 0.223460
1151 1648 12113697 0.7907808 0.7907808 -1.774200 -0.049915
## comparing anclo with alpha top
scaffold position ancmean ancfold alpha beta
15 4 4190884 0.2124915 0.7875085 1.738275 -2.275715
83 11 7335097 0.1421859 0.8578141 1.990895 -2.790900
88 11 8691829 0.1078842 0.8921158 1.464875 -2.290610
96 11 10860558 0.0985995 0.9014005 2.504490 -2.425400
97 11 10860564 0.0983821 0.9016179 2.048820 -2.024605
205 309 8389080 0.1435537 0.8564463 1.674640 -2.594110
206 309 8389096 0.1179287 0.8820713 1.393315 -2.250110
215 309 12340022 0.1621181 0.8378819 2.067170 -2.477860
272 758 2023 0.1771715 0.8228285 1.574165 -2.658500
325 1095 7019482 0.2270292 0.7729708 1.779265 -2.479880
326 1095 7019493 0.2189414 0.7810586 1.778125 -2.684390
327 1095 7019553 0.2190297 0.7809703 1.855215 -2.637325
343 1628 2792953 0.1872623 0.8127377 1.774805 -2.730315
397 1628 13677379 0.1445019 0.8554981 1.817560 -2.558360
468 1631 6116900 0.2144417 0.7855583 1.438155 -2.666980
779 1639 12335336 0.2039781 0.7960219 2.357320 -2.610690
841 1641 2835785 0.2261716 0.7738284 2.059785 -1.788105
872 1641 13685914 0.2131637 0.7868363 1.661925 -2.292755
919 1642 11407787 0.1115979 0.8884021 2.244410 -2.612815
1010 1645 9366622 0.1493518 0.8506482 1.682490 -2.118850
1013 1645 9587985 0.0890287 0.9109713 1.434700 -2.091950
1029 1645 15122056 0.1989815 0.8010185 1.746215 -2.479135
1030 1645 15122098 0.1973457 0.8026543 1.883700 -2.625855
1091 1647 3319221 0.2150804 0.7849196 1.779100 -2.470535
1092 1647 3319229 0.1277565 0.8722435 2.007160 -1.890585
1093 1647 3319267 0.1278233 0.8721767 1.685925 -1.078815
1109 1648 447128 0.2123487 0.7876513 1.973420 -2.564620
> ## comparing anclo with high beta
No SNPS
######################## predictability AIMS 2 ######################################################
### top 10% stats
############## high alpha ######################
### shared
obs_ha p_ha xfold_ha
[1,] 38 3e-04 1.784473
## Z
obs xfold p
[1,] 24 4.070971 0
### autosomes
obs xfold p
[1,] 29 1.632681 0.0034
############## low alpha ######################
### shared
obs_la p_la xfold_la
[1,] 10 0.9987 0.4695475
## Z
obs xfold p
[1,] 1 0.6425084 0.8186
### autosomes
obs xfold p
[1,] 7 0.3887269 0.9993
############## high beta #######################
### shared
obs_hb p_hb xfold_hb
[1,] 49 0 2.296308
## Z
obs xfold p
[1,] 26 3.403899 0
### autosomes
obs xfold p
[1,] 37 2.066289 0
## comparing anctop with alpha low
obs_hl p_hl xfold_hl
[1,] 20 0.6782 0.9328184
## comparing anclo with alpha top
obs_lh p_lh xfold_lh
[1,] 44 0 2.062948
##### SNPS#############
## top SNPs for each category
############## high alpha ######################
### shared
scaffold position ancmean ancfold alpha beta
35 4 6115063 0.8014055 0.8014055 1.441895 -0.060770
140 11 6234637 0.8147975 0.8147975 1.859620 0.115155
214 11 15712947 0.8306801 0.8306801 1.725145 0.119220
215 11 15712950 0.8356076 0.8356076 1.827440 0.131135
216 11 15713004 0.8342180 0.8342180 1.687040 -0.021810
610 1307 585 0.7682706 0.7682706 1.895225 0.132125
804 1631 2570345 0.8656940 0.8656940 1.984720 0.173035
811 1631 3909001 0.8057095 0.8057095 1.565900 -0.036740
814 1631 4238526 0.7860165 0.7860165 1.863680 0.082915
893 1631 8016774 0.8475661 0.8475661 1.633910 -0.007565
923 1631 9888414 0.8682295 0.8682295 1.789315 0.243685
924 1631 9958857 0.8708608 0.8708608 1.571245 0.068375
925 1631 10080421 0.8673974 0.8673974 1.795500 0.064055
952 1631 11671309 0.7739676 0.7739676 1.801265 0.001140
977 1631 12954191 0.7792462 0.7792462 2.014845 0.180490
978 1631 12954227 0.7794542 0.7794542 1.921150 0.183565
984 1631 13451563 0.8813172 0.8813172 1.504680 0.091905
987 1631 13614653 0.7867318 0.7867318 1.655625 0.148000
994 1631 13984174 0.7749957 0.7749957 1.799745 0.178050
996 1631 14010494 0.7913913 0.7913913 1.887140 0.226490
998 1631 14176930 0.7848608 0.7848608 1.499175 0.056145
1000 1631 14363264 0.7806877 0.7806877 1.580135 0.050565
1002 1631 14363307 0.8794692 0.8794692 1.405310 0.019925
1004 1631 14503153 0.8442209 0.8442209 1.923500 0.157065
1005 1631 14737572 0.7789191 0.7789191 1.841225 0.104365
1006 1631 14760795 0.8824512 0.8824512 1.872575 0.022395
1008 1631 14844190 0.7756026 0.7756026 1.802850 0.080450
1021 1631 15428179 0.8813668 0.8813668 1.745910 0.204605
1053 1631 19193726 0.8069887 0.8069887 1.878590 0.126140
1056 1631 19423098 0.7728161 0.7728161 1.947995 0.104230
1135 1632 6146628 0.8533373 0.8533373 1.950455 0.173515
1408 1639 15905593 0.8287704 0.8287704 1.894770 0.174625
1631 1642 9023853 0.8407818 0.8407818 1.646750 0.057630
1640 1642 10326736 0.8021213 0.8021213 1.751195 0.062145
1661 1642 11955993 0.7797952 0.7797952 1.807190 0.105235
1783 1645 2075187 0.7912172 0.7912172 1.935985 0.142795
1936 1646 10270861 0.7892724 0.7892724 1.643815 0.048705
2112 1648 13426790 0.8137299 0.8137299 1.856140 0.114345
## Z
scaffold position ancmean ancfold alpha beta
804 1631 2570345 0.8656940 0.8656940 1.984720 0.173035
811 1631 3909001 0.8057095 0.8057095 1.565900 -0.036740
814 1631 4238526 0.7860165 0.7860165 1.863680 0.082915
893 1631 8016774 0.8475661 0.8475661 1.633910 -0.007565
923 1631 9888414 0.8682295 0.8682295 1.789315 0.243685
924 1631 9958857 0.8708608 0.8708608 1.571245 0.068375
925 1631 10080421 0.8673974 0.8673974 1.795500 0.064055
952 1631 11671309 0.7739676 0.7739676 1.801265 0.001140
977 1631 12954191 0.7792462 0.7792462 2.014845 0.180490
978 1631 12954227 0.7794542 0.7794542 1.921150 0.183565
984 1631 13451563 0.8813172 0.8813172 1.504680 0.091905
987 1631 13614653 0.7867318 0.7867318 1.655625 0.148000
994 1631 13984174 0.7749957 0.7749957 1.799745 0.178050
996 1631 14010494 0.7913913 0.7913913 1.887140 0.226490
998 1631 14176930 0.7848608 0.7848608 1.499175 0.056145
1000 1631 14363264 0.7806877 0.7806877 1.580135 0.050565
1002 1631 14363307 0.8794692 0.8794692 1.405310 0.019925
1004 1631 14503153 0.8442209 0.8442209 1.923500 0.157065
1005 1631 14737572 0.7789191 0.7789191 1.841225 0.104365
1006 1631 14760795 0.8824512 0.8824512 1.872575 0.022395
1008 1631 14844190 0.7756026 0.7756026 1.802850 0.080450
1021 1631 15428179 0.8813668 0.8813668 1.745910 0.204605
1053 1631 19193726 0.8069887 0.8069887 1.878590 0.126140
1056 1631 19423098 0.7728161 0.7728161 1.947995 0.104230
### autosomes
scaffold position ancmean ancfold alpha beta
35 4 6115063 0.8014055 0.8014055 1.441895 -0.060770
65 4 10815221 0.7408172 0.7408172 1.575745 -0.084010
140 11 6234637 0.8147975 0.8147975 1.859620 0.115155
173 11 10612620 0.7652343 0.7652343 1.708805 0.006620
196 11 14218964 0.7581823 0.7581823 1.451625 -0.125025
214 11 15712947 0.8306801 0.8306801 1.725145 0.119220
215 11 15712950 0.8356076 0.8356076 1.827440 0.131135
216 11 15713004 0.8342180 0.8342180 1.687040 -0.021810
287 228 10922481 0.7401578 0.7401578 1.590570 -0.014355
610 1307 585 0.7682706 0.7682706 1.895225 0.132125
676 1628 6672514 0.7405198 0.7405198 1.977440 0.084895
682 1628 7839459 0.7554051 0.7554051 1.584320 0.047110
713 1628 11727277 0.7344255 0.7344255 1.774395 0.116355
715 1628 11922970 0.7462038 0.7462038 1.857465 0.026840
1135 1632 6146628 0.8533373 0.8533373 1.950455 0.173515
1136 1632 6907614 0.7675221 0.7675221 1.883870 0.171335
1210 1636 9395014 0.7565087 0.7565087 1.332425 0.158195
1277 1638 3885135 0.7270322 0.7270322 1.859355 0.128210
1408 1639 15905593 0.8287704 0.8287704 1.894770 0.174625
1631 1642 9023853 0.8407818 0.8407818 1.646750 0.057630
1639 1642 10326670 0.7492408 0.7492408 1.827885 0.194210
1640 1642 10326736 0.8021213 0.8021213 1.751195 0.062145
1651 1642 11229468 0.7318338 0.7318338 1.534990 0.092625
1661 1642 11955993 0.7797952 0.7797952 1.807190 0.105235
1783 1645 2075187 0.7912172 0.7912172 1.935985 0.142795
1936 1646 10270861 0.7892724 0.7892724 1.643815 0.048705
2054 1648 5960161 0.7470729 0.7470729 1.527405 0.041690
2103 1648 12120447 0.7632148 0.7632148 1.529155 0.106930
2112 1648 13426790 0.8137299 0.8137299 1.856140 0.114345
############## low alpha ######################
### shared
scaffold position ancmean ancfold alpha beta
98 4 15439916 0.1299114 0.8700886 -1.785105 -0.032655
406 503 3754537 0.0993012 0.9006988 -2.363585 -0.196730
700 1628 10120991 0.1441710 0.8558290 -1.587675 0.009260
791 1631 1171652 0.1814943 0.8185057 -1.772875 -0.034080
1106 1632 1906840 0.1823592 0.8176408 -1.493345 -0.057425
1307 1639 443703 0.1954116 0.8045884 -1.985190 -0.027595
1544 1641 7547976 0.1759788 0.8240212 -2.018805 -0.120945
1695 1644 2111571 0.1600000 0.8400000 -2.080915 -0.014605
1756 1644 11961843 0.2041772 0.7958228 -1.656550 0.092220
1934 1646 10245305 0.1096942 0.8903058 -2.063100 -0.055140
## Z
scaffold position ancmean ancfold alpha beta
791 1631 1171652 0.1814943 0.8185057 -1.772875 -0.03408
### autosomes
scaffold position ancmean ancfold alpha beta
98 4 15439916 0.1299114 0.8700886 -1.785105 -0.032655
406 503 3754537 0.0993012 0.9006988 -2.363585 -0.196730
700 1628 10120991 0.1441710 0.8558290 -1.587675 0.009260
1106 1632 1906840 0.1823592 0.8176408 -1.493345 -0.057425
1544 1641 7547976 0.1759788 0.8240212 -2.018805 -0.120945
1695 1644 2111571 0.1600000 0.8400000 -2.080915 -0.014605
1934 1646 10245305 0.1096942 0.8903058 -2.063100 -0.055140
############## high beta #######################
### shared
scaffold position ancmean ancfold alpha beta
134 11 5373688 0.1398795 0.8601205 2.042620 0.152360
214 11 15712947 0.8306801 0.8306801 1.725145 0.119220
215 11 15712950 0.8356076 0.8356076 1.827440 0.131135
439 503 9411925 0.1316106 0.8683894 1.773995 0.120330
594 1095 6687151 0.8590990 0.8590990 -1.145640 0.228880
723 1628 12893859 0.8394726 0.8394726 -0.792580 0.132340
804 1631 2570345 0.8656940 0.8656940 1.984720 0.173035
813 1631 4238467 0.8720862 0.8720862 -0.843250 0.684450
832 1631 5516528 0.8529703 0.8529703 -0.198510 0.459665
847 1631 6146721 0.8694924 0.8694924 -0.999765 0.638260
868 1631 6877788 0.8303007 0.8303007 0.070455 0.278280
871 1631 6999072 0.0578885 0.9421115 1.734350 0.163745
880 1631 7688497 0.8350613 0.8350613 -0.971800 0.359665
915 1631 9616362 0.8833971 0.8833971 0.259295 0.385205
916 1631 9616373 0.8591671 0.8591671 0.281250 0.341175
923 1631 9888414 0.8682295 0.8682295 1.789315 0.243685
971 1631 12682671 0.8824105 0.8824105 -1.109100 0.513460
972 1631 12759391 0.8421160 0.8421160 0.253795 0.134375
989 1631 13728571 0.8806733 0.8806733 -0.990475 0.521290
1004 1631 14503153 0.8442209 0.8442209 1.923500 0.157065
1007 1631 14799474 0.8841763 0.8841763 -1.316220 0.314705
1009 1631 14992849 0.8825163 0.8825163 0.113810 0.309140
1010 1631 15003188 0.8835321 0.8835321 -0.755785 0.669450
1012 1631 15044549 0.8535546 0.8535546 -1.094695 0.583285
1013 1631 15072253 0.8668923 0.8668923 -0.985850 0.982370
1020 1631 15428102 0.8812935 0.8812935 -1.146645 0.484235
1021 1631 15428179 0.8813668 0.8813668 1.745910 0.204605
1033 1631 16563245 0.8782858 0.8782858 -1.262715 0.433360
1034 1631 16742878 0.8668294 0.8668294 -0.372990 0.298940
1049 1631 18504663 0.8422536 0.8422536 -1.019185 0.322780
1078 1631 20910914 0.8323515 0.8323515 0.189145 0.150755
1088 1631 21250737 0.8574013 0.8574013 -1.024345 0.181110
1135 1632 6146628 0.8533373 0.8533373 1.950455 0.173515
1246 1636 15404495 0.1196305 0.8803695 1.820830 0.154010
1350 1639 8438185 0.8698830 0.8698830 -0.772685 0.121075
1351 1639 8557489 0.8579549 0.8579549 -0.355625 0.130655
1373 1639 12311957 0.1100226 0.8899774 1.861600 0.160445
1374 1639 12335336 0.1511581 0.8488419 1.928770 0.188575
1626 1642 8978175 0.8521164 0.8521164 0.056855 0.229635
1627 1642 8978201 0.8511432 0.8511432 -0.175300 0.146810
1629 1642 9017721 0.8412948 0.8412948 -0.741295 0.158125
1649 1642 10965470 0.0828058 0.9171942 1.884160 0.134520
1690 1644 1257051 0.1688412 0.8311588 1.476100 0.125840
1847 1645 13539602 0.8635543 0.8635543 0.101325 0.235325
1923 1646 7829984 0.1431415 0.8568585 1.946405 0.164035
1924 1646 7830034 0.0466404 0.9533596 1.862595 0.137765
1943 1646 12073166 0.8408598 0.8408598 -1.463525 0.171195
1988 1647 3319267 0.1291374 0.8708626 1.580280 0.122640
2108 1648 12512331 0.0860615 0.9139385 1.816105 0.165080
## Z
scaffold position ancmean ancfold alpha beta
804 1631 2570345 0.8656940 0.8656940 1.984720 0.173035
813 1631 4238467 0.8720862 0.8720862 -0.843250 0.684450
832 1631 5516528 0.8529703 0.8529703 -0.198510 0.459665
847 1631 6146721 0.8694924 0.8694924 -0.999765 0.638260
868 1631 6877788 0.8303007 0.8303007 0.070455 0.278280
871 1631 6999072 0.0578885 0.9421115 1.734350 0.163745
880 1631 7688497 0.8350613 0.8350613 -0.971800 0.359665
915 1631 9616362 0.8833971 0.8833971 0.259295 0.385205
916 1631 9616373 0.8591671 0.8591671 0.281250 0.341175
923 1631 9888414 0.8682295 0.8682295 1.789315 0.243685
971 1631 12682671 0.8824105 0.8824105 -1.109100 0.513460
972 1631 12759391 0.8421160 0.8421160 0.253795 0.134375
989 1631 13728571 0.8806733 0.8806733 -0.990475 0.521290
1004 1631 14503153 0.8442209 0.8442209 1.923500 0.157065
1007 1631 14799474 0.8841763 0.8841763 -1.316220 0.314705
1009 1631 14992849 0.8825163 0.8825163 0.113810 0.309140
1010 1631 15003188 0.8835321 0.8835321 -0.755785 0.669450
1012 1631 15044549 0.8535546 0.8535546 -1.094695 0.583285
1013 1631 15072253 0.8668923 0.8668923 -0.985850 0.982370
1020 1631 15428102 0.8812935 0.8812935 -1.146645 0.484235
1021 1631 15428179 0.8813668 0.8813668 1.745910 0.204605
1033 1631 16563245 0.8782858 0.8782858 -1.262715 0.433360
1034 1631 16742878 0.8668294 0.8668294 -0.372990 0.298940
1049 1631 18504663 0.8422536 0.8422536 -1.019185 0.322780
1078 1631 20910914 0.8323515 0.8323515 0.189145 0.150755
1088 1631 21250737 0.8574013 0.8574013 -1.024345 0.181110
### autosomes
scaffold position ancmean ancfold alpha beta
60 4 10230966 0.8640291 0.8640291 -1.650455 0.112425
134 11 5373688 0.1398795 0.8601205 2.042620 0.152360
172 11 10543233 0.1370382 0.8629618 1.919110 0.116360
214 11 15712947 0.8306801 0.8306801 1.725145 0.119220
215 11 15712950 0.8356076 0.8356076 1.827440 0.131135
418 503 4672537 0.1230864 0.8769136 1.582900 0.110970
439 503 9411925 0.1316106 0.8683894 1.773995 0.120330
594 1095 6687151 0.8590990 0.8590990 -1.145640 0.228880
723 1628 12893859 0.8394726 0.8394726 -0.792580 0.132340
1135 1632 6146628 0.8533373 0.8533373 1.950455 0.173515
1246 1636 15404495 0.1196305 0.8803695 1.820830 0.154010
1350 1639 8438185 0.8698830 0.8698830 -0.772685 0.121075
1351 1639 8557489 0.8579549 0.8579549 -0.355625 0.130655
1373 1639 12311957 0.1100226 0.8899774 1.861600 0.160445
1374 1639 12335336 0.1511581 0.8488419 1.928770 0.188575
1408 1639 15905593 0.8287704 0.8287704 1.894770 0.174625
1586 1642 4004685 0.1719316 0.8280684 1.699830 0.145350
1626 1642 8978175 0.8521164 0.8521164 0.056855 0.229635
1627 1642 8978201 0.8511432 0.8511432 -0.175300 0.146810
1628 1642 9013367 0.8647567 0.8647567 -1.152940 0.101125
1629 1642 9017721 0.8412948 0.8412948 -0.741295 0.158125
1649 1642 10965470 0.0828058 0.9171942 1.884160 0.134520
1655 1642 11407787 0.1441783 0.8558217 1.877870 0.110460
1690 1644 1257051 0.1688412 0.8311588 1.476100 0.125840
1803 1645 5734401 0.8398280 0.8398280 0.574440 0.109735
1823 1645 9587985 0.0886919 0.9113081 1.515870 0.104160
1827 1645 10123469 0.8722931 0.8722931 -1.567855 0.105775
1847 1645 13539602 0.8635543 0.8635543 0.101325 0.235325
1859 1645 15849590 0.8376723 0.8376723 -1.877750 0.102990
1894 1646 4324636 0.1715734 0.8284266 1.625710 0.141560
1911 1646 7096437 0.1361449 0.8638551 0.954390 0.103260
1923 1646 7829984 0.1431415 0.8568585 1.946405 0.164035
1924 1646 7830034 0.0466404 0.9533596 1.862595 0.137765
1943 1646 12073166 0.8408598 0.8408598 -1.463525 0.171195
1984 1647 3306548 0.1620614 0.8379386 1.560875 0.105940
1988 1647 3319267 0.1291374 0.8708626 1.580280 0.122640
2108 1648 12512331 0.0860615 0.9139385 1.816105 0.165080
## comparing anctop with alpha low
scaffold position ancmean ancfold alpha beta
60 4 10230966 0.8640291 0.8640291 -1.650455 0.112425
73 4 12406546 0.8312056 0.8312056 -1.674495 0.072325
74 4 12406549 0.8610427 0.8610427 -1.746625 0.038140
180 11 11853691 0.8000326 0.8000326 -1.570430 -0.007610
275 228 8765511 0.8296854 0.8296854 -1.516800 -0.008530
414 503 4260674 0.7770294 0.7770294 -1.558025 -0.006110
554 833 9037945 0.7886849 0.7886849 -1.488210 -0.058315
722 1628 12892018 0.8358341 0.8358341 -2.225030 -0.109040
819 1631 4700812 0.7995793 0.7995793 -1.651175 0.098200
934 1631 10141215 0.7822882 0.7822882 -1.542450 0.221820
969 1631 12488537 0.8280080 0.8280080 -1.672600 -0.028430
1042 1631 17316964 0.8815144 0.8815144 -1.584045 0.069550
1549 1641 9383474 0.8379787 0.8379787 -1.490055 0.078100
1622 1642 8954128 0.8504033 0.8504033 -2.413755 -0.068165
1623 1642 8954655 0.8210155 0.8210155 -1.718565 0.057040
1625 1642 8965217 0.8360035 0.8360035 -1.981900 -0.005105
1825 1645 9764683 0.8146474 0.8146474 -1.920835 0.119045
1827 1645 10123469 0.8722931 0.8722931 -1.567855 0.105775
1859 1645 15849590 0.8376723 0.8376723 -1.877750 0.102990
2061 1648 7392474 0.8835595 0.8835595 -1.658775 0.021925
## comparing anclo with alpha top
scaffold position ancmean ancfold alpha beta
134 11 5373688 0.1398795 0.8601205 2.042620 0.152360
145 11 6812147 0.1917791 0.8082209 1.754665 0.067975
172 11 10543233 0.1370382 0.8629618 1.919110 0.116360
175 11 10860558 0.0977081 0.9022919 1.536285 0.006625
418 503 4672537 0.1230864 0.8769136 1.582900 0.110970
439 503 9411925 0.1316106 0.8683894 1.773995 0.120330
447 503 10454182 0.1765275 0.8234725 1.406870 -0.038635
453 503 12088157 0.1327059 0.8672941 1.928995 0.058955
485 588 9709967 0.2010103 0.7989897 2.045035 0.211090
545 833 8160043 0.2044271 0.7955729 1.459045 0.020375
642 1628 2662045 0.0653069 0.9346931 1.759185 0.053085
644 1628 2792953 0.1098610 0.8901390 1.697510 -0.055620
648 1628 3242406 0.1391196 0.8608804 1.754020 0.066720
652 1628 3479921 0.1408406 0.8591594 1.767970 0.021290
727 1628 13677379 0.1544403 0.8455597 1.602550 0.031415
871 1631 6999072 0.0578885 0.9421115 1.734350 0.163745
1071 1631 19921541 0.0766168 0.9233832 1.557165 0.037420
1102 1632 802124 0.1843684 0.8156316 1.938225 0.189065
1246 1636 15404495 0.1196305 0.8803695 1.820830 0.154010
1373 1639 12311957 0.1100226 0.8899774 1.861600 0.160445
1374 1639 12335336 0.1511581 0.8488419 1.928770 0.188575
1401 1639 15460882 0.1936663 0.8063337 1.649730 0.119130
1456 1640 6913077 0.0788683 0.9211317 1.640415 0.036380
1473 1640 9028383 0.1978850 0.8021150 1.593725 0.066550
1586 1642 4004685 0.1719316 0.8280684 1.699830 0.145350
1649 1642 10965470 0.0828058 0.9171942 1.884160 0.134520
1655 1642 11407787 0.1441783 0.8558217 1.877870 0.110460
1690 1644 1257051 0.1688412 0.8311588 1.476100 0.125840
1820 1645 9366622 0.1439455 0.8560545 1.650685 0.089810
1823 1645 9587985 0.0886919 0.9113081 1.515870 0.104160
1894 1646 4324636 0.1715734 0.8284266 1.625710 0.141560
1914 1646 7180351 0.1298313 0.8701687 1.576375 0.096275
1923 1646 7829984 0.1431415 0.8568585 1.946405 0.164035
1924 1646 7830034 0.0466404 0.9533596 1.862595 0.137765
1963 1646 18002208 0.1482660 0.8517340 1.433210 0.001490
1984 1647 3306548 0.1620614 0.8379386 1.560875 0.105940
1985 1647 3319205 0.1918189 0.8081811 1.770485 0.140950
1986 1647 3319221 0.1852146 0.8147854 1.758770 0.054245
1987 1647 3319229 0.1856215 0.8143785 1.850905 0.165895
1988 1647 3319267 0.1291374 0.8708626 1.580280 0.122640
2004 1647 7125265 0.1919341 0.8080659 1.879980 0.143800
2027 1648 447128 0.1929399 0.8070601 1.794320 0.141550
2108 1648 12512331 0.0860615 0.9139385 1.816105 0.165080
2113 1648 13442025 0.0550383 0.9449617 1.753020 0.067020
#################### MALES aims 3 ########################
### top 10% stats
############## high alpha ######################
### shared
obs_ha p_ha xfold_ha
[1,] 32 0 2.626072
## Z
obs xfold p
[1,] 22 3.511796 0
### autosomes
obs xfold p
[1,] 19 1.95134 9e-04
############## low alpha ######################
### shared
obs_la p_la xfold_la
[1,] 5 0.9966 0.4108261
## Z
obs xfold p
[1,] 2 2.059096 0.2513
### autosomes
obs xfold p
[1,] 3 0.3064758 0.9985
############## high beta #######################
### shared
obs_hb p_hb xfold_hb
[1,] 38 0 3.116082
## Z
obs xfold p
[1,] 29 3.885785 0
### autosomes
obs xfold p
[1,] 16 1.639916 0.0272
## comparing anctop with alpha low
obs_hl p_hl xfold_hl
[1,] 3 0.9998 0.2457023
## comparing anclo with alpha top
obs_lh p_lh xfold_lh
[1,] 31 0 2.536451
## top SNPs for each category
############## high alpha ######################
### shared
scaffold position ancmean ancfold alpha beta
180 228 10922481 0.8306493 0.8306493 2.728635 -0.214720
247 503 6014039 0.8139855 0.8139855 1.868440 -0.466100
456 1631 1200324 0.8346626 0.8346626 2.024740 0.022255
465 1631 2570345 0.8469634 0.8469634 3.592410 -0.087515
469 1631 4238526 0.8733381 0.8733381 3.625835 -0.677005
501 1631 6653350 0.8373506 0.8373506 2.011365 -0.485460
532 1631 8947880 0.8623959 0.8623959 2.047990 -0.023485
544 1631 9958857 0.8267107 0.8267107 2.380970 0.078515
588 1631 12954191 0.8157603 0.8157603 3.467740 -0.078390
600 1631 14218357 0.8599306 0.8599306 2.609140 0.119690
601 1631 14363264 0.8267481 0.8267481 2.882880 0.309925
602 1631 14363278 0.8281602 0.8281602 2.634295 0.448540
603 1631 14363307 0.8279638 0.8279638 2.704545 -0.252750
605 1631 14737572 0.8157602 0.8157602 3.396520 0.214005
606 1631 14760795 0.8530743 0.8530743 3.015935 0.220640
615 1631 15408704 0.8762251 0.8762251 2.442660 -0.279960
618 1631 15428179 0.8745955 0.8745955 3.387895 -0.093635
622 1631 15731695 0.8774993 0.8774993 2.268845 -0.339955
623 1631 15900178 0.8619514 0.8619514 3.404720 -0.093040
630 1631 16742983 0.8459191 0.8459191 2.167130 -0.682545
633 1631 17266917 0.8760939 0.8760939 1.705925 -0.023615
642 1631 19193726 0.8265542 0.8265542 3.060335 -0.317170
653 1631 20094755 0.8304591 0.8304591 2.277670 -0.065735
672 1631 21679215 0.8653123 0.8653123 2.104365 0.371705
694 1632 6146628 0.8398278 0.8398278 3.579875 -0.589235
695 1632 6955044 0.8563115 0.8563115 2.170250 0.598250
907 1641 5846175 0.8223954 0.8223954 1.828590 0.144780
960 1642 8344495 0.8175407 0.8175407 2.379320 0.083435
967 1642 9023853 0.8216555 0.8216555 2.663210 -0.098495
1041 1645 2075187 0.8131425 0.8131425 3.632250 -0.168010
1122 1646 10270861 0.8320173 0.8320173 1.685710 -0.765235
1216 1648 13426790 0.8563385 0.8563385 2.683580 -0.337570
## Z
scaffold position ancmean ancfold alpha beta
456 1631 1200324 0.8346626 0.8346626 2.024740 0.022255
465 1631 2570345 0.8469634 0.8469634 3.592410 -0.087515
469 1631 4238526 0.8733381 0.8733381 3.625835 -0.677005
501 1631 6653350 0.8373506 0.8373506 2.011365 -0.485460
532 1631 8947880 0.8623959 0.8623959 2.047990 -0.023485
544 1631 9958857 0.8267107 0.8267107 2.380970 0.078515
588 1631 12954191 0.8157603 0.8157603 3.467740 -0.078390
600 1631 14218357 0.8599306 0.8599306 2.609140 0.119690
601 1631 14363264 0.8267481 0.8267481 2.882880 0.309925
602 1631 14363278 0.8281602 0.8281602 2.634295 0.448540
603 1631 14363307 0.8279638 0.8279638 2.704545 -0.252750
605 1631 14737572 0.8157602 0.8157602 3.396520 0.214005
606 1631 14760795 0.8530743 0.8530743 3.015935 0.220640
615 1631 15408704 0.8762251 0.8762251 2.442660 -0.279960
618 1631 15428179 0.8745955 0.8745955 3.387895 -0.093635
622 1631 15731695 0.8774993 0.8774993 2.268845 -0.339955
623 1631 15900178 0.8619514 0.8619514 3.404720 -0.093040
630 1631 16742983 0.8459191 0.8459191 2.167130 -0.682545
633 1631 17266917 0.8760939 0.8760939 1.705925 -0.023615
642 1631 19193726 0.8265542 0.8265542 3.060335 -0.317170
653 1631 20094755 0.8304591 0.8304591 2.277670 -0.065735
672 1631 21679215 0.8653123 0.8653123 2.104365 0.371705
### autosomes
scaffold position ancmean ancfold alpha beta
78 11 6234637 0.7596411 0.7596411 3.037690 -0.619570
180 228 10922481 0.8306493 0.8306493 2.728635 -0.214720
215 309 6742589 0.8079376 0.8079376 2.097490 -0.145775
247 503 6014039 0.8139855 0.8139855 1.868440 -0.466100
694 1632 6146628 0.8398278 0.8398278 3.579875 -0.589235
695 1632 6955044 0.8563115 0.8563115 2.170250 0.598250
762 1638 1613360 0.8608436 0.8608436 1.463300 -2.197435
809 1639 8378126 0.7806554 0.7806554 1.672000 -0.714330
810 1639 8378132 0.7804414 0.7804414 1.984960 -2.233170
907 1641 5846175 0.8223954 0.8223954 1.828590 0.144780
920 1641 9384153 0.7943155 0.7943155 1.634490 -0.503560
960 1642 8344495 0.8175407 0.8175407 2.379320 0.083435
967 1642 9023853 0.8216555 0.8216555 2.663210 -0.098495
1041 1645 2075187 0.8131425 0.8131425 3.632250 -0.168010
1122 1646 10270861 0.8320173 0.8320173 1.685710 -0.765235
1123 1646 10586032 0.7624152 0.7624152 1.996175 0.117970
1216 1648 13426790 0.8563385 0.8563385 2.683580 -0.337570
1217 1648 13619123 0.7853339 0.7853339 1.562190 0.529710
1218 1648 13619133 0.7860490 0.7860490 1.701390 -0.192060
############## low alpha ######################
### shared
scaffold position ancmean ancfold alpha beta
260 503 10430121 0.1995841 0.8004159 -1.575405 0.024780
395 1628 8610691 0.1856673 0.8143327 -1.517780 -0.179530
455 1631 1171652 0.1848389 0.8151611 -2.138205 -0.226855
612 1631 15267212 0.1452471 0.8547529 -1.713090 -0.308110
1120 1646 10245305 0.0761304 0.9238696 -1.972330 -0.532035
## Z
scaffold position ancmean ancfold alpha beta
455 1631 1171652 0.1848389 0.8151611 -2.138205 -0.226855
612 1631 15267212 0.1452471 0.8547529 -1.713090 -0.308110
### autosomes
scaffold position ancmean ancfold alpha beta
260 503 10430121 0.1995841 0.8004159 -1.575405 0.024780
395 1628 8610691 0.1856673 0.8143327 -1.517780 -0.179530
1120 1646 10245305 0.0761304 0.9238696 -1.972330 -0.532035
############## high beta #######################
### shared
scaffold position ancmean ancfold alpha beta
91 11 8117866 0.8747139 0.8747139 0.194690 1.314400
308 833 6668579 0.8716613 0.8716613 1.241725 0.613265
453 1631 1090637 0.8549352 0.8549352 0.516180 0.711490
468 1631 4238467 0.8727833 0.8727833 0.124130 1.165235
479 1631 5365561 0.8619962 0.8619962 -0.110510 1.269980
491 1631 6146721 0.1120191 0.8879809 -0.074985 1.291100
582 1631 12682671 0.8780371 0.8780371 -0.263780 1.279125
587 1631 12864459 0.8545492 0.8545492 1.010140 0.877415
592 1631 13582138 0.8772581 0.8772581 0.441380 0.501005
595 1631 13728571 0.8772866 0.8772866 0.016185 1.716985
596 1631 13908210 0.8754564 0.8754564 0.424215 1.059280
598 1631 13944328 0.8645332 0.8645332 -0.651895 0.703095
599 1631 14175992 0.8770008 0.8770008 -0.041460 1.443945
607 1631 14799474 0.1107421 0.8892579 -0.517165 1.273205
609 1631 15003188 0.8761253 0.8761253 0.392295 1.786885
610 1631 15044549 0.8700290 0.8700290 -0.209745 1.310290
611 1631 15072253 0.8762728 0.8762728 0.053225 1.635115
613 1631 15347591 0.8761797 0.8761797 -0.317690 1.394825
614 1631 15347619 0.8756768 0.8756768 -0.247830 1.438260
616 1631 15428089 0.8751598 0.8751598 -0.301985 1.433670
617 1631 15428102 0.8754476 0.8754476 -0.309850 1.357970
620 1631 15630833 0.8764553 0.8764553 -0.217115 1.103885
626 1631 16563238 0.8769290 0.8769290 -0.436600 1.412885
627 1631 16563245 0.8769264 0.8769264 -0.445880 1.422585
631 1631 17005201 0.8768978 0.8768978 0.926425 0.818650
632 1631 17266869 0.8754836 0.8754836 0.158370 0.624180
634 1631 17316949 0.8701993 0.8701993 0.003885 1.242475
666 1631 21250737 0.8737251 0.8737251 -0.613375 0.668720
667 1631 21250758 0.8740793 0.8740793 -0.912905 0.776970
669 1631 21303464 0.8699336 0.8699336 -0.217190 0.923260
671 1631 21567933 0.8614839 0.8614839 -0.185345 0.779855
678 1632 802124 0.1029196 0.8970804 3.427995 0.494900
695 1632 6955044 0.8563115 0.8563115 2.170250 0.598250
811 1639 8438185 0.8598155 0.8598155 -0.265835 0.874760
812 1639 8557489 0.8668706 0.8668706 0.420755 0.506980
964 1642 8978175 0.8604388 0.8604388 1.206075 0.737585
965 1642 8978201 0.8598622 0.8598622 0.752760 0.639640
1135 1646 18002208 0.1250728 0.8749272 2.036315 0.782640
## Z
scaffold position ancmean ancfold alpha beta
453 1631 1090637 0.8549352 0.8549352 0.516180 0.711490
468 1631 4238467 0.8727833 0.8727833 0.124130 1.165235
479 1631 5365561 0.8619962 0.8619962 -0.110510 1.269980
491 1631 6146721 0.1120191 0.8879809 -0.074985 1.291100
582 1631 12682671 0.8780371 0.8780371 -0.263780 1.279125
587 1631 12864459 0.8545492 0.8545492 1.010140 0.877415
592 1631 13582138 0.8772581 0.8772581 0.441380 0.501005
595 1631 13728571 0.8772866 0.8772866 0.016185 1.716985
596 1631 13908210 0.8754564 0.8754564 0.424215 1.059280
598 1631 13944328 0.8645332 0.8645332 -0.651895 0.703095
599 1631 14175992 0.8770008 0.8770008 -0.041460 1.443945
607 1631 14799474 0.1107421 0.8892579 -0.517165 1.273205
609 1631 15003188 0.8761253 0.8761253 0.392295 1.786885
610 1631 15044549 0.8700290 0.8700290 -0.209745 1.310290
611 1631 15072253 0.8762728 0.8762728 0.053225 1.635115
613 1631 15347591 0.8761797 0.8761797 -0.317690 1.394825
614 1631 15347619 0.8756768 0.8756768 -0.247830 1.438260
616 1631 15428089 0.8751598 0.8751598 -0.301985 1.433670
617 1631 15428102 0.8754476 0.8754476 -0.309850 1.357970
620 1631 15630833 0.8764553 0.8764553 -0.217115 1.103885
626 1631 16563238 0.8769290 0.8769290 -0.436600 1.412885
627 1631 16563245 0.8769264 0.8769264 -0.445880 1.422585
631 1631 17005201 0.8768978 0.8768978 0.926425 0.818650
632 1631 17266869 0.8754836 0.8754836 0.158370 0.624180
634 1631 17316949 0.8701993 0.8701993 0.003885 1.242475
666 1631 21250737 0.8737251 0.8737251 -0.613375 0.668720
667 1631 21250758 0.8740793 0.8740793 -0.912905 0.776970
669 1631 21303464 0.8699336 0.8699336 -0.217190 0.923260
671 1631 21567933 0.8614839 0.8614839 -0.185345 0.779855
### autosomes
scaffold position ancmean ancfold alpha beta
38 4 11837611 0.8377726 0.8377726 0.879525 0.535015
40 4 12406546 0.8452268 0.8452268 -1.083500 0.817520
41 4 12406549 0.8467142 0.8467142 -1.215830 1.051290
91 11 8117866 0.8747139 0.8747139 0.194690 1.314400
229 385 136 0.8461301 0.8461301 -0.138600 1.165215
269 588 5529429 0.1503783 0.8496217 -0.841510 0.383115
308 833 6668579 0.8716613 0.8716613 1.241725 0.613265
678 1632 802124 0.1029196 0.8970804 3.427995 0.494900
695 1632 6955044 0.8563115 0.8563115 2.170250 0.598250
811 1639 8438185 0.8598155 0.8598155 -0.265835 0.874760
812 1639 8557489 0.8668706 0.8668706 0.420755 0.506980
821 1639 10026163 0.8707413 0.8707413 -1.012420 0.449810
964 1642 8978175 0.8604388 0.8604388 1.206075 0.737585
965 1642 8978201 0.8598622 0.8598622 0.752760 0.639640
1121 1646 10270851 0.8330301 0.8330301 -0.522415 0.989675
1135 1646 18002208 0.1250728 0.8749272 2.036315 0.782640
## comparing anctop with alpha low
scaffold position ancmean ancfold alpha beta
635 1631 17316964 0.8700846 0.8700846 -1.924685 -0.266095
963 1642 8965217 0.8508800 0.8508800 -1.471840 -0.179900
1068 1645 10123469 0.8591709 0.8591709 -1.659180 0.003030
## comparing anclo with alpha top
scaffold position ancmean ancfold alpha beta
103 11 10860564 0.1044131 0.8955869 1.868740 -1.245740
228 309 12340022 0.1984371 0.8015629 2.025385 -1.264345
240 503 4672537 0.1413131 0.8586869 1.691425 0.206030
280 588 9709967 0.1441926 0.8558074 3.538225 -0.292465
331 833 12528387 0.1965404 0.8034596 1.588170 -0.699865
344 1095 7019482 0.2051543 0.7948457 1.778165 -0.798690
345 1095 7019493 0.2059365 0.7940635 2.528625 -0.915940
346 1095 7019553 0.2066917 0.7933083 2.335565 0.268620
364 1628 2792953 0.1164881 0.8835119 1.929125 -1.431725
415 1628 12948947 0.1894115 0.8105885 2.076655 0.305230
507 1631 6999005 0.0701091 0.9298909 2.809905 0.251795
660 1631 21014131 0.1633855 0.8366145 2.502715 -0.048035
678 1632 802124 0.1029196 0.8970804 3.427995 0.494900
789 1639 1824300 0.1031857 0.8968143 1.588770 -0.313295
823 1639 10829666 0.1672605 0.8327395 2.261410 -0.514755
827 1639 12335336 0.1673424 0.8326576 3.469710 0.170290
829 1639 12343035 0.1655265 0.8344735 1.793465 -0.308395
913 1641 6701209 0.0378420 0.9621580 1.884190 0.070975
929 1641 13685914 0.1598431 0.8401569 2.500510 0.238825
954 1642 7608058 0.1204879 0.8795121 2.095945 0.075775
979 1642 11407787 0.1014545 0.8985455 3.360965 -0.160090
1037 1645 1212317 0.1943647 0.8056353 1.821705 -0.431555
1063 1645 9366622 0.0596386 0.9403614 2.901980 -1.138975
1081 1645 15122035 0.1630085 0.8369915 2.809150 -0.207550
1082 1645 15122056 0.1617548 0.8382452 3.215530 0.068830
1083 1645 15122098 0.1629492 0.8370508 3.275145 -0.151480
1135 1646 18002208 0.1250728 0.8749272 2.036315 0.782640
1144 1647 3306548 0.1700973 0.8299027 2.997540 -0.179710
1145 1647 3319221 0.1717246 0.8282754 3.250775 -0.281990
1146 1647 3319229 0.1731264 0.8268736 3.110585 0.274385
1147 1647 3319267 0.1706838 0.8293162 2.830050 -0.208550