Edit the mappos position file using perl command line:
perl -pe 's/ScRvNkF_\d+:LG-//g' temp | perl -pe 's/:SCAF-/ /g' | perl -pe 's/:MAPPOS-/ /g' | perl -pe 's/;\d+\.\d+\;\d+\.\d+|;0;0//g' | perl -pe 's/;\d+\.\d+\;\d+//g' > mappos.txt
Questions:
How many SNPs overlap for each environmental variable between species? enrichment tests
What are the regions?