Post date: Oct 10, 2016 5:33:52 PM
I am running popanc on the sex (Z) chromosome data with the local ancestry (-Z) option. All runs use L. anna as one source population and either L. melissa west (outsexZ*), L. melissan north (outsexmnZ*) or L. idas (outsexidZ*) as the other source populations. Once again, I am running five chains for each. Here is one example:
cd /uufs/chpc.utah.edu/common/home/u6000989/projects/lyc_hybanc/ancfreqs/
popanc -o /scratch/general/lustre/u6000989/outsexZBKM4.hdf5 -n 5 -d 15 -m 50000 -b 25000 -t 20 -s 1 -q 1 -z 1 infiles/comb_lychybSex_Anna.txt infiles/comb_lychybSex_MelWest.txt infiles/pntest_lychybSex_BKM.txt
cp /scratch/general/lustre/u6000989/outsexZBKM4.hdf5 ./