Simulating epidemiology datasets; The Human Cell Atlas.

Journal Club

Nature 20 November 2024

The Human Cell Atlas: towards a first draft.

https://www.humancellatlas.org, consider how it complements TCGA ...

https://data.humancellatlas.org/apis/api-documentation/data-browser-api 

...

Cancer outcomes predicted using AI-extracted data from clinical notes

https://www.nature.com/articles/d41586-025-00335-5 

Hackathon

Simulating epidemiology datasets [Rodrigo, Ana, Jeya]

https://observablehq.com/d/26478eba9074ea56 

...

The ONXX route. [Praful]

https://observablehq.com/d/33215844d1916944 

https://observablehq.com/@ca0474a5f8162efb/an-overview-of-transformers-js 

...

The native in-browser AI [Jonas]

https://developer.chrome.com/docs/ai
[API Status]
[Prompt API]

Note support for structured JSON output and schema.

Ebedding text: https://ai.google.dev/edge/mediapipe/solutions/text/text_embedder/web_js 

Note embedding of other data types in the same page

Google AI Edge

Edge computing, see also MediaPipe and how it can be used in embeding. The broader open source framework is intrigging https://ai.google.dev/edge/mediapipe/solutions/guide 

ES6 is supported ... try

```
vis = await import('https://cdn.jsdelivr.net/npm/@mediapipe/tasks-vision/vision_bundle.js')
```

...

AI Assistants emerge in Extensions? 

https://chromewebstore.google.com/category/extensions

This how AI fits in an extension: https://developer.chrome.com/docs/extensions/ai/prompt-api 

...