Journal Club - PGS [Matilde]

PGS

Led by Ana+Matilde, discussed by Lorena and Jeya, for Ana Freita's sabbatical visit. 

Clinical Pharmacogenetics reference that FDA considers: https://cpicpgx.org 

Clinical Pharmacogenetics Implementation Consortium (CPIC) has released the first version of its database and API to the public.

Ana's old company: https://www.heartgenetics.com (they developed the App you just saw)

LDBlock: https://pubs.broadinstitute.org/mammals/haploreg/haploreg.php

Elixir

Start here

https://www.ga4gh.org/strategic_partner/elixir 

https://www.ga4gh.org

Observable: 

https://observablehq.com/@episphere/elixir 

... (your own)

...

Hackathon - distributed computing [Praful]

...

Posit - note George Zaki's participation next week

• POSIT Connect as the FAIRest analytics env for epidemiologists and statisticians.

• POSIT: Connect components - RShiny, PlumeR, Quarto.

• POSIT: Workspaces. 

...

Yjs test

https://episphere.github.io/lab/testYjs.html

yarrayShared <-- shared object

updateYArrayShared(['not a cofeecup']) <-- sharing

yarrayShared.toJSON() <-- finding what is being shared

Signaling server implementation: https://github.com/yjs/y-webrtc/blob/master/bin/server.js  

MISC

• thank Biowulf

• Jeya's semantic interpretation of transformers + attention as structure in the embedded space:
  Grant Sanderson's recent video on Attention Operator is amazing! This is the exact intuition I use to understand the Attention operator :).

• A shoutout to 3Blue1Brown video series

• ...

Eclipse