2022-01-26 JAN
Journal Club - GWAS Workshop
Cell Genomics, 1(1), 100004.
Volume 1, Issue 1, 13 October 2021, 100004
Workshop proceedings: GWAS summary statistics standards and sharing
Jacqueline A.L.MacArthur, AnnalisaBuniello, Laura W.Harris, JamesHayhurst, AoifeMcMahon, ElliotSollis, MariaCerezo, PeggyHall, ElizabethLewis, Patricia L.Whetzel, Orli G.Bahcall, Inês Barroso, Robert J.Carroll, MichaelInouye, Teri A.Manolio, Stephen S.Rich, Lucia A.Hindorff, KenWiley, HelenParkinson
* try to crash it by, say, engaging the diagram...
https://www.ebi.ac.uk/gwas/home
https://www.ebi.ac.uk/gwas/docs/api
https://www.ebi.ac.uk/gwas/downloads <-- note RDF and OWL ...
check what is called by https://www.ebi.ac.uk/gwas/search?query=rs7329174
or by https://www.ebi.ac.uk/gwas/studies/GCST001969
and by https://www.ebi.ac.uk/gwas/search?query=6:16000000-25000000
FTP : ftp://ftp.ebi.ac.uk/pub/databases/gwas/summary_statistics/
Note parelelism with pgs: http://ftp.ebi.ac.uk/pub/databases/gwas/summary_statistics, check for example, http://ftp.ebi.ac.uk/pub/databases/gwas/summary_statistics/Ahola-OlliAV_27989323_GCST004420
https://observablehq.com/@episphere/gwas
Compare with the sister EBI risk resource; https://observablehq.com/@episphere/pgs
...
Hackathon - GWAS Catalog
Digital Pathology
Quest JSON
Biospecimen Connect sub-system
News
Yann LeCun: Dark Matter of Intelligence and Self-Supervised Learning (2nd interview with Lex Fridman)