Journal Club

NCI Human Tumor Atlas Summer Meeting (Jun12-23)
https://www.youtube.com/watch?v=i-NNwD-SeZI 

Data: 

1) Synapse - Open Acccess Processed level 3 and level 4 

2) Imaging: https://portal.imaging.datacommons.cancer.gov/explore (public)

Phil's Webification projects

Webification projects (Philip Rosenberg)

Slides for both projects here

project 1 - Singular Values Adaptive Kernel Filtration (SIFT)

https://faculty.washington.edu/skalski/classes/QERM597/papers_xtra/Burnham%20and%20Anderson.pdf

Bias corrected AIC

...

project 2 - Comparative Age-Period-Cohort Analysis (Capricorn)

context: https://dceg.cancer.gov/tools/analysis/apc 

https://pubmed.ncbi.nlm.nih.gov/25146089/

Cancer Epidemiol Biomarkers Prev

2014 Nov;23(11):2296-302. doi: 10.1158/1055-9965.EPI-14-0300. Epub 2014 Aug 21.

A web tool for age-period-cohort analysis of cancer incidence and mortality rates

Philip S Rosenberg 1, David P Check 2, William F Anderson 2

...

The Lexis Diagram

Slides [public]

https://en.wikipedia.org/wiki/Lexis_diagram 

Can we assembled it from data sources like Ci5.
CDC Wonder should work too.
a lexis web tool may need to start with  https://dceg.cancer.gov/tools/analysis/apc, at least as a model.
Thias may be useful: Scholey, Jonas, and Frans Willekens. "Visualizing compositional data on the Lexis surface." Demographic Research, vol. 36, Jan.-June 2017, pp. 627+. Gale Academic OneFile, link.gale.com/apps/doc/A497178870/AONE?u=anon~b13c4988&sid=googleScholar&xid=c3c2ac39.

Smoothing Lexis Diagrams Using Kernel Functions - A Contemporary Approach

Slides [private]

Comparative Analysis Figures & Tables

Slides [private]

Hackathon 

P2P, SDKs - medicare, cms, epiGraph