2021-10-06 OCT
Journal Club
Daniel's cell type atlas;
https://www.nature.com/articles/s41467-021-25125-1
A harmonized atlas of mouse spinal cord cell types and their spatial organization
Daniel E. Russ, Ryan B. Patterson Cross, Li Li, Stephanie C. Koch, Kaya J. E. Matson, Archana Yadav, Mor R. Alkaslasi, Dylan I. Lee, Claire E. Le Pichon, Vilas Menon & Ariel J. Levine
Nature Communications volume 12, Article number: 5722 (2021)
https://github.com/ArielLevineLabNINDS
Hackathon
GDC's new APIs
(thank you Martin for calling our attention to it)
https://docs.gdc.cancer.gov/API/Users_Guide/Getting_Started
More from Martin, including link to webcast:
GDC scRNA webinar: https://gdc.cancer.gov/support/gdc-webinars/gdc-single-cell-rna-seq-support (Note recording not posted yet. Recording will be here when it is posted.)
GDC scRNA workflow: https://github.com/NCI-GDC/gdc-cellranger-cwl (Note: jupyter notebook not here yet. Should be available on github when webinar recording is posted.)
Scheduled processes (Nicole)
...
Notes:
https://solutions.rstudio.com/data-science-admin/scheduling
CICD saves the day ! (thank you Bhaumik)
cloudflare
for developers: https://developers.cloudflare.com
FaaS: https://workers.cloudflare.com
STorage: https://www.cloudflare.com/press-releases/2021/cloudflare-announces-r2-storage/ <-- new, storage
epiBox
https://episphere.github.io/epibox
+ recall external auth model