2021-12-29 DEC
Journal Club
Is Bioinformatics Dead? (again)
Bourne PE (2021) Is “bioinformatics” dead? PLoS Biol 19(3): e3001165.
https://doi.org/10.1371/journal.pbio.3001165
Hackathon - 10:30-11:30
continuing PART I
The Fellowship of TensorFlow: Part IIa
Data from part I is shared here: https://drive.google.com/drive/folders/1vJMhusjvkmD6CsLuPbQy7kELs5VmBve7
Praful's computation of part II (in browser): https://observablehq.com/@prafulb/tf-tfjs-for-c4b
model.json here: https://cloud4bio.github.io/data/model.json
save and load models to TF.js :
https://www.tensorflow.org/js/guide/save_load
The model:
https://cloud4bio.github.io/data/model.json
and the weights:
https://cloud4bio.github.io/data/group1-shard1of1.bin
Recording:
https://www.youtube.com/watch?v=fYB1vwzLH6I
The Fellowship of TensorFlow: Part III
R TensorFlow: https://tensorflow.rstudio.com/
Blog on R AI/TensorFlow/Torch: https://blogs.rstudio.com/ai/
Spin R VMs on Colab: https://colab.research.google.com/notebook#create=true&language=r
Drive: https://googledrive.tidyverse.org/
GCS: https://cran.r-project.org/web/packages/googleCloudStorageR/vignettes/googleCloudStorageR.html
Sheets: https://github.com/jennybc/googlesheets
BigQuery: https://bigrquery.r-dbi.org/
SavedModel: https://rdrr.io/github/rstudio/keras/man/save_model_tf.html
ONNX: https://onnx.ai/onnx-r/
Plumber/Shiny/TF Serving/RStudio Connect: https://tensorflow.rstudio.com/deploy/
One ring to rule them all?
Data: HDF5, Zarr, TFRecords?
Models: ONNX, SavedModel, Apache TVM?