--> Alex Szalay talking at 11:00 <--

indeed we'll adjurn a little early :-)

OMOP (Nicole)

I was very impressed with the OHDSI community, especially, in the areas of interoperability, transparency, and validation of analyses.  I look forward to discussing OHDSI/OMOP with you as we develop the Connect data model. 

Links:

• 2019 OHDSI Symposium Materials - https://www.ohdsi.org/2019-ohdsi-symposium-materials/

  • For an overview of the OHDSI community check out - https://www.ohdsi.org/wp-content/uploads/2019/09/1-Welcome-Session.pdf

  • The Green Button Service beginning on slide 105 of the Lightning talks is very inspiring - https://www.ohdsi.org/wp-content/uploads/2019/09/6-All-Lightning-Talks.pdf

• Article on the All of Us transformation of i2b2 data into the OMOP common data model -  https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0212463

• The Book of OHSDI which is a compilation of OHDSI resources including best practices - https://www.amazon.com/OHDSI-Observational-Health-Sciences-Informatics/dp/1088855199/ref=sr_1_1?keywords=the+book+of+ohdsi&qid=1568909581&sr=8-1

• Information about the development of the Book is here -  https://www.ohdsi.org/wp-content/uploads/2019/09/MadiganSchuemieV10.pdf

• https://www.ohdsi.org/web/wiki/doku.php?id=resources:2019_data_network  - this is a list of all the datasets that have been mapped to OMOP CDM

• https://www.ohdsi.org/web/wiki/doku.php?id=videos:overview  -video tutorials

• https://github.com/OHDSI/OHDSI-in-a-Box  - From Praful on Gitter "This repo contains a Virtual Machine image with OHDSI tools and sample datasets "

• https://nih.box.com/s/w345tkezap1x8sgb3a9kfq2ukpkilc4w - link to slides presented in Box

Nicole Gerlanc, Ph.D. [C] | Data Analyst, NCI

Extreme programming (All)

repl.it, the Cloud IDE ?

• Interview with founder

TensorFlow (Praful)

(Praful on repl.it?)

FireBase (Bhaumik)

(Bhaumik on repl.it?)

NoSQL APIs for tabular data

... anyone ...

Read Compression with Graphs on Short Read Sequencers (Ben)

anyone want to join on a call on the subject at the end of October (DM/email me?)