2020-04-01 APR
Current
Welcome onboard Brian
Recall github-centric development and communications,
Internal collaboration using MSTeams gaining traction.
UI/UX
Bhaumik has been converging towards a look-and-feel in Confluence. Let's find out what frameworks and design patterns work for him.
AI
Serverless AI with in browser delivery integration - https://imjoy.io
https://www.nature.com/articles/s41592-019-0627-0.epdf
https://www.thelancet.com/action/showPdf?pii=S1473-3099%2820%2930144-4
P2P data science learning at NCI
https://github.com/cbiit/p2p-datasci, more at the bottom
COVID19 Data Science and Engineering
This will be a special session to compare what each of us learned from COVID data resources. Please put you name below and the links you'll be using in your show-and-tell. What are we learning that informs the use of data resources like https://datascience.cancer.gov/data-commons, and how can we extend it to identify risk models for cancer treatment co-morbidity. Note broad consortium, https://ccc19us.org (have a look), soliciting patient data directly.
Jeya
http://covid19-r.herokuapp.com/
https://www.medrxiv.org/content/medrxiv/early/2020/03/20/2020.02.19.20025452.full.pdf
Nicole
https://www.ohdsi.org/covid-19-updates
Jonas
https://observablehq.com/@episphere/corona
https://observablehq.com/@episphere/nytcovid19
Martin Ferguson
https://covid19.healthdata.org/projections
http://www.healthdata.org/results/data-visualizations
Bhaumik
https://bhaumik55231.github.io/COVID-19/
Praful
Using epiPath to annotate and train a model over COVID-19 chest X-Ray images
https://www.kaggle.com/theroyakash/covid19
Sean
https://github.com/seandavi/sars2pack
Daniel
Ben
Upcoming CoVID-19 Hackathons!
- Online -- Research to the People -- Stanford Based, April 4-5
- Online - Biohackathon (Japan) Based, April 5-9
- Online -- Hackseq -- Vancouver Based, Current - May 21
Updates and more at https://biohackathons.github.io. If you have hackathon announcements, willing to give push access to known entities!