Journal Club

Chaos game representation and its applications in bioinformatics
Hannah Franziska Löchel ¹, Dominik Heider ¹
Comput Struct Biotechnol J. 2021 Nov 10;19:6263-6271 [PMD34900136]

(preparation for Jan 19 presentation)

For the canonical representation discussion - encoding sequence storage:

Fractal construction of constrained code words for DNA storage systems

Hannah F Löchel, Marius Welzel, Georges Hattab, Anne-Christin Hauschild, Dominik Heider

Nucleic Acids Res 2021 Dec 15;gkab1209. https://doi.org/10.1093/nar/gkab1209. Online ahead of print.

Hackathon - SDKs, perspectives and methods

Review of Starboard and other client-side Notebooks.

Hackaton on SDK developemnt in preparation for Friday FAIR special session requested by Connect and Journal Club Jan 19th

Examples used in the discussion (add your own):

https://observablehq.com/@episphere/usm

https://observablehq.com/@prafulb/imagebox3-in-observable

Piodide lib support https://github.com/pyodide/pyodide/tree/main/packages

embedding observable and jupyter: https://starboard.gg/gz/open-source-observablehq-nfwK2VA

...