2020-01-22 JAN

GitHub actions (Bhaumik)

GCP adoption is suggesting a different route to FAIR configuration of workflows. The section continues initial experiments with github actions we approached in the 2019-11-20 NOV session.

https://github.com/episphere/connectFaas/actions/new

CloudRun (Daniel)

https://cloud.google.com/run/

EpiSphere QAQC

When designing to a shared platform with a shared domain origin such as episphere.github.io/qaqc, how should we configure code injection?

Data Framing

From csv to json, how do we ingest structured data? Let's start with something very simple, completely untyped - https://episphere.github.io/qaqc/iris.csv. Give it a try in your favorite analytical environment. Along the way try to identify what data frame structure would address the goals of your analysis.

Concepts/issues:

  • untyped csv - there is a dubious track record for untyped data analysis in cancer research.
  • flat vs non-flat JSON - data streaming pushes for a different model than traditional data frames. There may be patterns that help detect which one your application is ingesting: a) [ --> flat streaming; b) {[ --> flat frame; b) {{ --> nested frame

Typing (ISO) data standards for the Web:

What is "12/11/1949 00:00:00" for the Web?

what about "1949-11-12 00:00:00"

Any arguments that the Web is not how we settle it?

Questionnaires

Nick (episphere.github.io/quest) ...

ROC

Noor (episphere.github.io/roc) ...

Watching/Listening