Our FAIR paper is out :-) !

Journal Club - 9:30-10:30

Metabolic Epidemiology 

DCEG Stadtman Seminar

Speaker: Pedro Saint-Maurice, Ph.D., Research Fellow, Metabolic Epidemiology Branch, DCEG, NCI

Title: Physical activity, sleep, and cancer: Advancing research through the use of  new technologies 

Date: Wednesday, February 22, 2022 at 9:30 – 10:30 AM (EST)

Location: Zoom https://nih.zoomgov.com/j/1617301437

Hackaton - 10:30 11:30

Resume review of PRS

https://sites.google.com/mathbiol.org/cloud4bio/2023/2023-02-15-feb 

Resume discussion of how generic argument for risk scores in the form https://www.nature.com/articles/nrg.2016.27#Sec5 

COMETS - Metabolic Epidemiology Data Platform

• The initial descriptive paper on COMETS can be found at: https://academic.oup.com/aje/article/188/6/991/5341178 

• More current details on COMETS (the consortium has grown) are at: https://cssi.cancer.gov/comets

• A description of COMETS Analytics can be found at: https://academic.oup.com/aje/article/191/1/147/6246103.

• If interested, an editorial about COMETS Analytics is at: https://pubmed.ncbi.nlm.nih.gov/34435200/

• COMETS Analytics (and links to sample files, tutorials, etc.) is at: https://www.comets-analytics.org/

• The Github page for COMETS Analytics is at: https://github.com/CBIIT/R-cometsAnalytics/tree/master/RPackageSource

• (not public) The descriptive data assembled for the first two papers from COMETS is at: https://analysistools-dev.cancer.gov/comets-explorer (in progress)  <-- use this as an example of development in partnership with analytics (recall Nicole's suggestion about how to handle open source development between public dev and private production.

Gitter

... is it dying :-( ?