Learning the natural history of human disease with generative transformers  [by Lee Mason]

Shmatko, A., Jung, A.W., Gaurav, K. et al. Learning the natural history of human disease with generative transformers.
Nature (2025).  https://doi.org/10.1038/s41586-025-09529-3

Podcast by Google Notebook: audio ; video
Nature podcast: https://www.nature.com/articles/d41586-025-03026-3
Nature News: https://www.nature.com/articles/d41586-025-02993-x
Open access, Published: 17 September 2025

Learning the natural history of human disease with generative transformers

Artem Shmatko, Alexander Wolfgang Jung, Kumar Gaurav, Søren Brunak, Laust Hvas Mortensen, Ewan Birney, Tom Fitzgerald & Moritz Gerstung

Hackathon [by Lee Mason]

1. Can we run it ...?
   ...

2. API ?
   ...

3. Using the ONNX Runtime: Delphi-2M in your browser

something as simple as

pipeline = (await import('https://cdn.jsdelivr.net/npm/@huggingface/transformers@3.7.3')).pipeline;
classifier = await pipeline('sentiment-analysis')

...

?

4. ...