R-Z
R-bundle-Bioconductor
Bioconductor provides tools for the analysis and coprehension of high-throughput genomic data.
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R
R is a free software environment for statistical computing and graphics.
Other possible modules matches:
.base/relion .base/schrodinger .base/singularity Amber Arrow Brotli CUDAcore CellProfiler CellRanger DendroPy EasyBuild_retired FriBidi ...
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RStudio-Server
RStudio Server enables you to provide a browser based interface to a version of R running on a remote Linux server, bringing the power and productivity
of the RStudio IDE to server-based deployments of R.
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Rust
Rust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety.
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SAMtools
SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a
per-position format.
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SCOTCH
Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and
hypergraph partitioning.
More information
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- Homepage: https://gforge.inria.fr/projects/scotch/
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SEPP
SATe-enabled Phylogenetic Placement - addresses the problem of phylogenetic placement of short reads into reference alignments and trees.
More information
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- Homepage: https://github.com/smirarab/sepp
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SHAPEIT4
SHAPEIT4 is a fast and accurate method for estimation of haplotypes (aka phasing) for SNP array and high coverage sequencing data.
More information
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- Homepage: https://odelaneau.github.io/shapeit4/
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STAR
STAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays.
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SciPy-bundle
Bundle of Python packages for scientific software
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Spark
Spark is Hadoop MapReduce done in memory
More information
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- Homepage: https://spark.apache.org
Included extensions
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py4j-0.10.9.5
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An open-source software library for Machine Intelligence
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TopHat
TopHat is a fast splice junction mapper for RNA-Seq reads.
More information
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- Homepage: http://ccb.jhu.edu/software/tophat/
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VTK
The Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK
consists of a C++ class library and several interpreted interface layers including Tcl/Tk, Java, and Python. VTK supports a wide variety of
visualization algorithms including: scalar, vector, tensor, texture, and volumetric methods; and advanced modeling techniques such as: implicit
modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay triangulation.
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XCrySDen
XCrySDen is a crystalline and molecular structure visualisation program aiming at display of isosurfaces and contours, which can be superimposed on
crystalline structures and interactively rotated and manipulated.
More information
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- Homepage: http://www.xcrysden.org/