Beagle

Description:

Beagle is a software package for phasing genotypes and imputing ungenotyped markers. 

Beagle version 5.4 has improved memory and computational efficiency when analyzing large sequence data sets.

Usage:

• module load beagle5

• java -jar $BEAGLE <rest of the command>

Example:

• copy /usr/local/doc/beagle/run.beagle.19Apr22.7c0.example to your home directory

• run the example:

  • module load beagle5

  • bash run.beagle.19Apr22.7c0.example