Publications - 2022

2022

1. Jessica Abreu, Douglas C. Crowder, Robert F. Kirsch, "Deep Reinforcement Learning for Control of Time-Varying Musculoskeletal Systems With High Fatigability: A Feasibility Study", IEEE Trans. Neural Syst. Rehabil. Eng., 2022, doi:10.1109/TNSRE.2022.3203970.

2. Ahmed Tahseen Minhaz, Michaela Cooley, Ananya Subramaniam, Agata Exner, Faruk Orge, David Wilson, Mahdi Bayat, "End-to-end deep learning for tuning-free non-contrast ultrasound microvessel imaging", 2022 IEEE International Ultrasonics Symposium (IUS), 2022, doi:10.1109/IUS54386.2022.9958473.

3. Ahmed Tahseen Minhaz, Duriye Damla Sevgi, Sunwoo Kwak, Alvin Kim, Talia Burstein, Nithya Kanagasegar, Hao Wu, Richard W. Helms, Mahdi Bayat, Faruk H. Orge, David L. Wilson, "Deep learning segmentation of ciliary tissues using 3D ultrasound biomicroscopy (3D-UBM) images", Medical Imaging 2022: Ultrasonic Imaging and Tomography, 2022, doi:10.1117/12.2613025.

4. Juhwan Lee, Justin N. Kim, Gabriel T. R. Pereira, Yazan Gharaibeh, Chaitanya Kolluru, Vladislav N. Zimin, Luis A. P. Dallan, Issam K. Motairek, Ammar Hoori, Giulio Guagliumi, Hiram G. Bezerra, David L. Wilson, "Automatic microchannel detection using deep learning in intravascular optical coherence tomography images", Medical Imaging 2022: Image-Guided Procedures, Robotic Interventions, and Modeling, 2022, doi:10.1117/12.2612697.

5. Chunlei Guo, Mohamed ElKabbash, Nathaniel Hoffman, Andrew Lininger, Sohail Jalil, Theodore Letsou, Michael Hinczewski, Giuseppe Strangi, "Fano Resonant Optical coatings platform for Full Gamut and High Purity Structural Colors", 2022, doi:10.21203/rs.3.rs-2078826/v1.

6. Nathan Farrokhian, Jeff Maltas, Mina Dinh, Arda Durmaz, Patrick Ellsworth, Masahiro Hitomi, Erin McClure, Andriy Marusyk, Artem Kaznatcheev, Jacob G. Scott, "Measuring competitive exclusion in non–small cell lung cancer", Sci. Adv., 2022, doi:10.1126/sciadv.abm7212.

7. Juhwan Lee, Justin N. Kim, Yazan Gharaibeh, Vladislav N. Zimin, Luis A. P. Dallan, Gabriel T. R. Pereira, Armando Vergara-Martel, Chaitanya Kolluru, Ammar Hoori, Hiram G. Bezerra, David L. Wilson, "OCTOPUS -- optical coherence tomography plaque and stent analysis software", 2022, doi:10.48550/arXiv.2204.10212.

8. Andrea R. Waksmunski, Tyler G. Kinzy, Lauren A. Cruz, Cari L. Nealon, Christopher W. Halladay, Scott A. Anthony, Paul B. Greenberg, Jack M. Sullivan, Wen-Chih Wu, Sudha K. Iyengar, Dana C. Crawford, Neal S. Peachey, Jessica N. Cooke Bailey, "Diversity is key for cross-ancestry transferability of glaucoma genetic risk scores in Hispanic Veterans in the Million Veteran Program", Biocomputing 2023, 2022, doi:10.1142/9789811270611_0038.

9. Andrea R. Waksmunski et al., “Glaucoma Genetic Risk Scores in the Million Veteran Program.” Ophthalmology, 2022, doi:10.1016/j.ophtha.2022.06.012.

10. Juhwan Lee, Gabriel T. R. Pereira, Yazan Gharaibeh, Chaitanya Kolluru, Vladislav N. Zimin, Luis A. P. Dallan, Justin N. Kim, Ammar Hoori, Sadeer G. Al-Kindi, Giulio Guagliumi, Hiram G. Bezerra, David L. Wilson, "Automated analysis of fibrous cap in intravascular optical coherence tomography images of coronary arteries", Sci Rep, 2022, doi:10.1038/s41598-022-24884-1.

11. Raymond J. Wieser, Zelin Zack Li, Stephanie L. Moffitt, Ruben Zabalza, Evan Boucher, Silvana Ayala, Matthew Brown, Xiaohong Gu, Liang Ji, Colleen O'Brien, Adam W. Hauser, Greg S. O'Brien, Xuanji Yu, Roger H. French, Micheal D. Kempe, Jared Tracy, Kausik R. Choudhury, William J. Gambogi, Laura S. Bruckman, Kenneth P. Boyce, "Spatiotemporal Modeling of Real World Backsheets Field Survey Data: Hierarchical (Multilevel) Generalized Additive Models", 2022 IEEE 49th Photovoltaics Specialists Conference (PVSC), 2022, doi:10.1109/PVSC48317.2022.9938576.

12. Yash Khasbage, Daniel Alcaraz Carrión, Jennifer Hinnell, Frankie Robertson, Karan Singla, Peter Uhrig, Mark Turner, "The Red Hen Anonymizer and the Red Hen Protocol for de-identifying audiovisual recordings", Linguistics Vanguard, 2022, doi:10.1515/lingvan-2022-0017.

13. Juhwan Lee, Justin N. Kim, Lia Gomez-Perez, Yazan Gharaibeh, Issam Motairek, Gabriel T. R. Pereira, Vladislav N. Zimin, Luis A. P. Dallan, Ammar Hoori, Sadeer Al-Kindi, Giulio Guagliumi, Hiram G. Bezerra, David L. Wilson, "Automated Segmentation of Microvessels in Intravascular OCT Images Using Deep Learning", Bioengineering, 2022, doi:10.3390/bioengineering9110648.

14. Mohamed ElKabbash, Nathaniel Hoffman, Andrew R Lininger, Sohail A. Jalil, Theodore Letsou, Michael Hinczewski, Giuseppe Strangi, Chunlei Guo, "Fano Resonant Optical coatings platform for Full Gamut and High Purity Structural Colors", 2022, doi:10.48550/arXiv.2208.03777.

15. Yanjun Li, Ya-Ting T. Liao, "Numerical study of flame spread in a narrow flow duct in microgravity – effects of flow confinement and radiation reflection", Combustion and Flame, 2022, doi:10.1016/j.combustflame.2021.111714.

16. Victor G. Desyatkin, William B. Martin, Ali E. Aliev, Nathaniel E. Chapman, Alexandre F. Fonseca, Douglas S. Galvão, Ericka Roy Miller, Kevin H. Stone, Zhong Wang, Dante Zakhidov, F. Ted Limpoco, Sarah R. Almahdali, Shane M. Parker, Ray H. Baughman, Valentin O. Rodionov, "Scalable Synthesis and Characterization of Multilayer γ-Graphyne, New Carbon Crystals with a Small Direct Band Gap", J. Am. Chem. Soc., 2022, doi:10.1021/jacs.2c06583.

17. Ammar Hoori, Tao Hu, Juhwan Lee, Sadeer Al-Kindi, Sanjay Rajagopalan, David L. Wilson, "Deep learning segmentation and quantification method for assessing epicardial adipose tissue in CT calcium score scans", Sci Rep, 2022, doi:10.1038/s41598-022-06351-z.

18. Luis A. Ortiz-Rodríguez, Sean J. Hoehn, Carlos E. Crespo-Hernández, "On the Photostability of Cyanuric Acid and Its Candidature as a Prebiotic Nucleobase", Molecules, 2022, doi:10.3390/molecules27041184.

19. Luis A.P. Dallan, Vladislav N. Zimin, Juhwan Lee, Yazan Gharaibeh, Justin N. Kim, Gabriel T.R. Pereira, Armando Vergara-Martel, Pengfei Dong, Linxia Gu, David L. Wilson, Hiram G. Bezerra, "Assessment of Post-Dilatation Strategies for Optimal Stent Expansion in Calcified Coronary Lesions: Ex Vivo Analysis With Optical Coherence Tomography", Cardiovascular Revascularization Medicine, 2022, doi:10.1016/j.carrev.2022.05.004.

20. Arda Durmaz, Jacob G Scott, "Stability of scRNA-Seq Analysis Workflows is Susceptible to Preprocessing and is Mitigated by Regularized or Supervised Approaches", Evol Bioinform Online, 2022, doi:10.1177/11769343221123050.

21. Yiqiao Liu, Madhusudhana Gargesha, Bryan Scott, Arthure Olivia Tchilibou Wane, David L. Wilson, "Deep learning multi-organ segmentation for whole mouse cryo-images including a comparison of 2D and 3D deep networks", Sci Rep, 2022, doi:10.1038/s41598-022-19037-3.

22. Timothy H. Ciesielski, Jacquelaine Bartlett, Sudha K. Iyengar, Scott M. Williams, "Hemizygosity can reveal variant pathogenicity on the X-chromosome", Hum Genet, 2022, doi:10.1007/s00439-022-02478-1.

23. Ryan Tatton, Erman Ayday, Youngjin Yoo, Anisa Halimi, "ShareTrace: Contact Tracing with the Actor Model", 2022 IEEE International Conference on E-health Networking, Application & Services (HealthCom), 2022, doi:10.1109/HealthCom54947.2022.9982762.

24. Nicholas F. Bean, Lisa M. Lombardo, Ronald J. Triolo, Musa L. Audu, "Facilitation of dependent transfers with functional neuromuscular stimulation: a computer simulation study", Med Biol Eng Comput, 2022, doi:10.1007/s11517-022-02672-3.

25. Anna K Miller, Calvin Pan, Aldons J Lusis, Dana C Crawford, Scott M Williams, David A Buchner, "Omnigenic epistasis regulates complex trait heritability", 2022, doi:10.1101/2022.09.28.509932.

26. Nora A. Shaheen, William Dean, Drace Penley, Bethany Kersten, Jacob Rintamaki, Miomir B. Vukmirovic, Burcu E. Gurkan, Rohan Akolkar, "Electro–Oxidation of Nitroxide Radicals: Adsorption–Mediated Charge Transfer Probed Using SERS and Potentiometry", J. Electrochem. Soc., 2022, doi:10.1149/1945-7111/ac7082.

27. Ahmed Tahseen Minhaz, Duriye Damla Sevgi, Sunwoo Kwak, Alvin Kim, Hao Wu, Richard W. Helms, Mahdi Bayat, David L. Wilson, Faruk H. Orge, "Deep Learning Segmentation, Visualization, and Automated 3D Assessment of Ciliary Body in 3D Ultrasound Biomicroscopy Images", Trans. Vis. Sci. Tech., 2022, doi:10.1167/tvst.11.10.3.

28. Naishka E. Caldero-Rodríguez, Luis A. Ortiz-Rodríguez, Andres A. Gonzalez, Carlos E. Crespo-Hernández, "Photostability of 2,6-diaminopurine and its 2′-deoxyriboside investigated by femtosecond transient absorption spectroscopy", Phys. Chem. Chem. Phys., 2022, doi:10.1039/D1CP05269A.

29. Giovanna Palermo, Andrew Lininger, Alexa Guglielmelli, Loredana Ricciardi, Giuseppe Nicoletta, Antonio De Luca, Joon-Suh Park, Soon Wei Daniel Lim, Maryna L. Meretska, Federico Capasso, Giuseppe Strangi, "All-Optical Tunability of Metalenses Permeated with Liquid Crystals", ACS Nano, 2022, doi:10.1021/acsnano.2c05887.

30. Yeyuan Li, Yasuhiro Kamotani, "Control-volume study of flow field in a two-phase cyclonic separator in microgravity", Theor. Comput. Fluid Dyn., 2022, doi:10.1007/s00162-022-00635-w.

31. Kathryn G. Wilcox, Marlee E. Dingle, Ankit Saha, Michael J. A. Hore, Svetlana Morozova, "Persistence length of α-helical poly-l-lysine", Soft Matter, 2022, doi:10.1039/D2SM00921H.

32. Andrea R. Waksmunski, Kristy Miskimen, Yeunjoo E. Song, Michelle Grunin, Renee Laux, Denise Fuzzell, Sarada Fuzzell, Larry D. Adams, Laura Caywood, Michael Prough, Dwight Stambolian, William K. Scott, Margaret A. Pericak-Vance, Jonathan L. Haines, "Consequences of a Rare Complement Factor H Variant for Age-Related Macular Degeneration in the Amish", Invest. Ophthalmol. Vis. Sci., 2022, doi:10.1167/iovs.63.9.8.

33. Naishka E. Caldero-Rodríguez, Carlos E. Crespo-Hernández, "Excited state dynamics of 2′-deoxyisoguanosine and isoguanosine in aqueous solution", Phys. Chem. Chem. Phys., 2022, doi:10.1039/D1CP05795B.

34. Luiz Fernando Vieira, Alexandra C. Weinhofer, William C. Oltjen, Cindy Yu, Paulo Roberto de Souza Mendes, Michael J. A. Hore, "Combining dynamic Monte Carlo with machine learning to study nanoparticle translocation", Soft Matter, 2022, doi:10.1039/D2SM00431C.

35. William Dean, Drace Penley, Yun-Yang Lee, Raziyeh Ghahremani, Saudagar Dongare, Burcu Gurkan, "Anion Effects on the Interfacial Structure and Bulk Physical Properties in Choline-Based Hydrogen-Bonded Electrolytes", J. Phys. Chem. C, 2022, doi:10.1021/acs.jpcc.2c01901.

36. Ozan Dernek, Dmitry Skachkov, Walter R. L. Lambrecht, Mark van Schilfgaarde, "Real-space representation of the quasiparticle self-consistent GW self-energy and its application to defect calculations", Phys. Rev. B, 2022, doi:10.1103/PhysRevB.105.205136.

37. Anthony Yu-Tung Wang, Mahamad Salah Mahmoud, Mathias Czasny, Aleksander Gurlo, "CrabNet for Explainable Deep Learning in Materials Science: Bridging the Gap Between Academia and Industry", Integr Mater Manuf Innov, 2022, doi:10.1007/s40192-021-00247-y.

38. Shanshan Zhang, Dylan Plummer, Leina Lu, Jian Cui, Wanying Xu, Miao Wang, Xiaoxiao Liu, Nachiketh Prabhakar, Jatin Shrinet, Divyaa Srinivasan, Peter Fraser, Yan Li, Jing Li, Fulai Jin, "DeepLoop robustly maps chromatin interactions from sparse allele-resolved or single-cell Hi-C data at kilobase resolution", Nat Genet, 2022, doi:10.1038/s41588-022-01116-w.

39. Luis A. Ortiz‐Rodríguez, Glesmarie Ortiz‐Zayas, Marvin Pollum, Sean J. Hoehn, Steffen Jockusch, Carlos E. Crespo‐Hernández, "Intramolecular Charge Transfer in the Azathioprine Prodrug Quenches Intersystem Crossing to the Reactive Triplet State in 6‐Mercaptopurine †", Photochem & Photobiology, 2022, doi:10.1111/php.13513.

40. Hao Jiang, Hao Wang, Valerie Scott, Bo Li, "Numerical analysis of oblique hypervelocity impact damage to space structural materials by ice particles in cryogenic environment", Acta Astronautica, 2022, doi:10.1016/j.actaastro.2022.02.029.

41. Sean J. Hoehn, Sarah E. Krul, Brandon J. Skory, Carlos E. Crespo‐Hernández, "Increased Photostability of the Integral mRNA Vaccine Component N 1 ‐Methylpseudouridine Compared to Uridine", Chemistry A European J, 2022, doi:10.1002/chem.202103667.

42. Fengchun Ye, David Alvarez-Carbonell, Kien Nguyen, Konstantin Leskov, Yoelvis Garcia-Mesa, Sheetal Sreeram, Saba Valadkhan, Jonathan Karn, "Recruitment of the CoREST transcription repressor complexes by Nerve Growth factor IB-like receptor (Nurr1/NR4A2) mediates silencing of HIV in microglial cells", PLoS Pathog, 2022, doi:10.1371/journal.ppat.1010110.

43. Erika I. Barcelos, Shaghayegh Khani, Mônica F. Naccache, Joao Maia, "Supervised learning for accurate mesoscale simulations of suspension flow in wall-bounded geometries", Physics of Fluids, 2022, doi:10.1063/5.0086759.

44. Calina Copos, Wanda Strychalski, "Actin Turnover Required for Adhesion-Independent Bleb Migration", Fluids, 2022, doi:10.3390/fluids7050173.

45. Rui-Hao Li, Pengtao Shen, Steven S.-L. Zhang, "Tunable spin–charge conversion in class-I topological Dirac semimetals", APL Materials, 2022, doi:10.1063/5.0077431.

46. Jacob Scott, Jessica Scarborough, Steven Eschrich, Javier Torres-Roca, Andrew Dhawan, "Exploiting convergent evolution to derive a pan-cancer cisplatin response gene expression signature", 2022, doi:10.21203/rs.3.rs-2121659/v1.

47. Konstantin Holzhausen, Lukas Ramlow, Shusen Pu, Peter J. Thomas, Benjamin Lindner, "Mean-return-time phase of a stochastic oscillator provides an approximate renewal description for the associated point process", Biol Cybern, 2022, doi:10.1007/s00422-022-00920-1.

48. Mohnish Peswani, Brian Maxwell, "Detonation wave diffraction in stoichiometric C2H4/O2 mixtures using a global four-step combustion model", Physics of Fluids, 2022, doi:10.1063/5.0116804.

49. Brian Maxwell, Josué Melguizo-Gavilanes, "Origins of instabilities in turbulent mixing layers behind detonation propagation into reactive–inert gas interfaces", Physics of Fluids, 2022, doi:10.1063/5.0113073.

50. Gideon Idumah, Erkki Somersalo, Daniela Calvetti, "A Spatially Distributed Model of Brain Metabolism Highlights the Role of Diffusion in Brain Energy Metabolism", 2022, doi:10.48550/arXiv.2211.02182.

51. Ziyi Li, Hao Feng, "A neural network-based method for exhaustive cell label assignment using single cell RNA-seq data", Sci Rep, 2022, doi:10.1038/s41598-021-04473-4.

52. Shan Ling, Jiawei Chen, Maryse Lapierre-Landry, Junwoo Suh, Yehe Liu, Michael W. Jenkins, Michiko Watanabe, Stephanie M. Ford, Andrew M. Rollins, "Automated endocardial cushion segmentation and cellularization quantification in developing hearts using optical coherence tomography", Biomed. Opt. Express, 2022, doi:10.1364/BOE.467629.

53. Jakob Woerner, Yidi Huang, Stephan Hutter, Carmelo Gurnari, Jesús María Hernández Sánchez, Janet Wang, Yimin Huang, Daniel Schnabel, Michael Aaby, Wanying Xu, Vedant Thorat, Dongxu Jiang, Babal K. Jha, Mehmet Koyuturk, Jaroslaw P. Maciejewski, Torsten Haferlach, Thomas LaFramboise, "Circulating microbial content in myeloid malignancy patients is associated with disease subtypes and patient outcomes", Nat Commun, 2022, doi:10.1038/s41467-022-28678-x.

54. Andy Paul Chen, W. M. C. Foulkes, Arthur H. Heuer, Michael W. Finnis, "Diffusion of oxygen in Mg-doped α−Al2O3: The corundum conundrum explained", Phys. Rev. Materials, 2022, doi:10.1103/PhysRevMaterials.6.063404.

55. Andy Paul Chen, Arthur H. Heuer, Michael W. Finnis, W. M. C. Foulkes, "Electronic structure of α−Al2O3 grain boundaries containing reactive element segregants", Phys. Rev. Materials, 2022, doi:10.1103/PhysRevMaterials.6.093402.