Publications - 2013

2013

1. Y.-T. T. Liao and J. S. T’ien: A Numerical Simulation of Transient Ignition and Ignition Limit of a Composite Solid by a Localised Radiant Source, Combustion Theory and Modelling, Vol. 17, Iss. 6, pp. 1096-1124, 2013

2. John T. GiblinJr., James B. Mertens, Vacuum bubbles in the presence of a relativistic fluid, Journal of High Energy Physics, December 2013, 2013:42

3. Patel VN, Gokulrangan G, Chowdhury SA, Chen Y, Sloan AE, Koyutürk M, Barnholtz-Sloan J, Chance MR. Network signatures of survival in glioblastoma multiforme. PLoS Comput Biol. 2013;9(9):e1003237. doi: 10.1371/journal.pcbi.1003237. Epub 2013 Sep 19. PubMed PMID: 24068912; PubMed Central PMCID: PMC3777929.

4. Vengoechea J, Sloan AE, Chen Y, Guan X, Ostrom QT, Kerstetter A, Capella D, Cohen ML, Wolinsky Y, Devine K, Selman W, Barnett GH, Warnick RE, McPherson C, Chiocca EA, Elder JB, Barnholtz-Sloan JS. Methylation markers of malignant potential in meningiomas. J Neurosurg. 2013 Oct;119(4):899-906. doi: 10.3171/2013.7.JNS13311. Epub 2013 Aug 9. PubMed PMID: 23930849.

5. Jagodnik K, van den Bogert A, Blana D, Kirsch R (2013) Toward the Restoration of Voluntary Arm Movement in High-Level Spinal Cord Injury: An Optimized Feedback Controller for a 3-Dimensional Arm. Poster Presentation at ShowCASE, April 12, 2013, Case Western Reserve University, Cleveland, Ohio.

6. Electronic band structure, phonons, and exciton binding energies of halide perovskites CsSnCl3, CsSnBr3, and CsSnI3, Ling-yi Huang and Walter R. L. Lambrecht, Phys. Rev. B 88, 165203 (2013) - Published 17 October 2013

7. Strain effects on the spin-orbit-induced band structure splittings in monolayer MoS2 and graphene, Tawinan Cheiwchanchamnangij, Walter R. L. Lambrecht, Yang Song, and Hanan Dery, Phys. Rev. B 88, 155404 (2013) - Published 7 October 2013

8. Band offsets between ZnGeN2, GaN, ZnO, and ZnSnN2 and their potential impact for solar cells, Atchara Punya and Walter R. L. Lambrecht, Phys. Rev. B 88, 075302 (2013) - Published 2 August 2013

9. J. Uddin and A. B. Anderson, "Trends with coverage and pH in Stark tuning rates for CO on Pt(111)", Electrochim. Acta 108, 398-403 (2013),

10. S. Gajurel and R. Bielefeld, "Fast Vertex Cover Algorithms and Its Implementation using CWRU High Performance Computing Cluster (HPCC)", Poster Presentation at Research ShowCase 2013. Link to poster

11. Sahoo S, Jayapandian C, Garg G, Kaffashi F, Chung S, Bozorgi A, Chen CH, Loparo K, Lhatoo SD, and Zhang GQ. Heart beats in the cloud: distributed analysis of electrophysiological 'big data' using cloud computing for epilepsy clinical research. Journal of the American Medical Informatics Association (2013). [PMID: 24326538]

12. Jayapandian CP, Chen CH, Bozorgi A, Lhatoo SD, Zhang GQ, Sahoo SS. Cloudwave: Distributed Processing of “Big Data” from Electrophysiological Recordings for Epilepsy Clinical Research Using Hadoop. American Medical Informatics Association (AMIA) Annual Symposium, 2013. pp. 691-700.

13. Huang, W., Greene, G.L., Ravikumar, K., and Yang, S. "Cross-talk between the ligand- and DNA-binding domains of estrogen receptor," Proteins. doi: 10.1002/prot.24331 (2013). [Applied multiscale simulations for the energy landscape of a multidomain protein complex]

14. Ravikumar, K., Huang, W., and Yang, S. "Fast-SAXS-pro: A unified approach to computing SAXS profiles of DNA, RNA, protein, and their complexes," J. Chem. Phys. 138 (2) 024112, (2013) [Developed a new SAXS computing algorithm for protein-DNA/RNA complexes]

15. Yang, S.*, Ravikumar, K., Levine, H.* "Energy evaluation of β-strand packing in a fibril-forming SH3 domain," J. Phys. Chem. B. doi: 10.1021/jp402442p (2013). [*Corr authors]

16. Toth, R., Traghber, B., Ellis, R., Kurhanewicz, J., Madabhushi, A. “Registration of Pre and Post Intensity Modulated Radiation Therapy Prostate MRI for Quantification of MR Imaging Marker Changes and Precise Local Prostate Deformations,” at: Research ShowCASE, Case Western Reserve University, Cleveland, OH, Apr 2013.

17. Toth, R., Ribault, J., Gentile, J.C., Sperling, D., Madabhushi, A. “Simultaneous Segmentation of Prostatic Zones Using Active Appearance Models with Multiple Coupled Levelsets,” CVIU Special Issue on Shape Modeling, April 2013. doi: 10.1016/j.cviu.2012.11.013.

18. Toth, R., Kurhanewicz, J., Madabhushi, A. “Registration of Pre and Post Intensity Modulated Radiation Therapy Prostate MRI for Quantification of MR Imaging Marker Changes and Precise Local Prostate Deformations” ISMRM 2013.

19. Singanamalli A., Sparks R., Rusu M., Shih N., Ziober A., Tomaszewski J., Rosen M., Feldman M, and Madabhushi A. "Radiohistomorphometric Image Analysis and Coregistration Scheme to identify DCE MRI markers for prostate cancer aggressiveness." 2013 ShowCASE.

20. Singanamalli A., Sparks R., Rusu M., Shih N., Ziober A., Tomaszewski J., Rosen M., Feldman M, and Madabhushi A. "Radiohistomorphometric Image Analysis and Coregistration Scheme to identify DCE MRI markers for prostate cancer aggressiveness." 2013 ISMRM.

21. Haibo Wang, Anant Madabhushi, Discriminatively Weighted Multi-Scale Local Binary Patterns: Applications in Prostate Cancer Diagnosis on T2W MRI, ISBI (oral), 2013.

22. Eileen Hwuang, Shabbar Danish, Mirabela Rusu, Robert Sparks, Robert Toth, Anant Madabhushi. Anisotropic Smoothing Regularization (AnSR) in Thirion's Demons Registration Evaluates Brain MRI Tissue Changes Post-Laser Ablation. Conf Proc IEEE Eng Med Biol Soc. 2013.

23. Singanamalli, Asha, et al. "Identifying in vivo DCE MRI parameters correlated with ex vivo quantitative microvessel architecture: A radiohistomorphometric approach." SPIE Medical Imaging. International Society for Optics and Photonics, 2013.

24. Mirabela Rusu, B. Nicolas Bloch, C. Carl Jaffe, Neil M. Rofsky, Elizabeth M. Genega, Robert E. Lenkinski, Anant Madabhushi; Statistical 3D prostate imaging atlas construction via anatomically constrained registration, SPIE Medical Imaging Feb 2013

25. Mirabela Rusu, Haibo Wang, Thea Golden, Andrew Gow, Anant Madabhushi. Multiscale, multimodal fusion of histological and MRI lung volumes for characterization of airways SPIE Medical Imaging Feb 2013

26. Mirabela Rusu, B. Nicolas Bloch, Carl Jaffe, Neil Rofsky, Elizabeth Genega, Robert Lenkinski, Anant Madabhushi; Statistical 3D prostate imaging atlas construction via anatomically constrained registration; ShowCase Case Western Research University, April 12, 2013 Cleveland; *Postdoctoral Research Award

27. Viswanath, S, Bloch, BN, Chappelow, J, Genega, E, Lenkinski, R, Rofsky, N, Madabhushi, A, “Comparing Classifier Ensembles for Discriminating Central Gland and Peripheral Zone Tumors on In Vivo 3 Tesla T2-weighted Prostate MRI”, BMC Bioinformatics (under review).

28. Viswanath, S, Toth, R, Rusu, M, Sperling, D, Lepor, H, Futterer, J, Madabhushi, A, “Quantitative evaluation of treatment related changes on multi-parametric MRI after laser interstitial thermal therapy of prostate cancer”, SPIE Medical Imaging, 2013, vol 8671, 86711F.

29. Viswanath, S, Toth, R, Rusu, M, Sperling, D, Lepor, H, Futterer, J, Madabhushi, A, “Quantitative Evaluation of Treatment Related Changes on Multi-Parametric MRI after Laser Interstitial Thermal Therapy of Prostate Cancer”, ISMRM, Apr 2013.

30. Viswanath, S, Toth, R, Rusu, M, Sperling, D, Lepor, H, Futterer, J, Madabhushi, A, “Quantitative Evaluation of Treatment Related Changes on Multi-Parametric MRI after Laser Interstitial Thermal Therapy of Prostate Cancer“, Research ShowCASE, Case Western Reserve University, Cleveland, OH Apr 2013.

31. A. B. Anderson, R. Jinnouchi, and J. Uddin, "Effective Reversible Potentials and Onset Potentials for O2 Electroreduction on Transition Metal Electrodes: Theoretical Analysis", J. Phys. Chem. C 117, 41-48 (2013).

32. L. García Domínguez, J.L. Pérez Domínguez, R. F. Galán (2013). A Model of Functional Brain Connectivity and Background Noise as a Biomarker for Cognitive Phenotypes: Application to Autism. PLoS ONE 8(4): e61493. Link to article

33. Villarreal SA, Williams DR, Johnson CH, Egli M, Stewart PL. (2013) Examining the S. elongatus KaiBC Complex by CryoEM and MDFF. Microscopy and Microanalysis Annual meeting presentation.

34. Seth A. Villarreal, Rekha Pattanayak, Dewight R. Williams, Carl H. Johnson, Martin Egli, Phoebe L. Stewart. Modeling of the Circadian Clock KaiBC Complex. Poster Presentation at Research ShowCase 2013.

35. Justin W. Flatt, Eric Irons, Konstantin Doronin, Tara L. Fox, Dmitry M. Shayakhmetov, and Phoebe L. Stewart Adenovirus Immunity: Insights from coagulation factor VII on how X marks the spot. Poster Presentation at Research ShowCase 2013.

36. Flatt JW, Kim, R Smith JG, Nemerow GR, Stewart PL (2013). An intrinsically disordered region of the adenovirus capsid is implicated in neutralization by human alpha defensin 5. PLoS One, 8(4):e61571

37. Guo, H.; Zehavi, I.; Zheng, Z.; Weinberg, D. H.; Berlind, A. A.; Blanton, M.; Chen, Y.; Eisenstein, D. J.; Ho, S.; Kazin, E.; Manera, M.; Maraston, C.; McBride, C. K.; Nuza, S. E.; Padmanabhan, N.; Parejko, J. K.; Percival, W. J.; Ross, A. J.; Ross, N. P.; Samushia, L.; Sánchez, A. G.; Schlegel, D. J.; Schneider, D. P.; Skibba, R. A.; Swanson, M. E. C.; Tinker, J. L.; Tojeiro, R.; Wake, D. A.; White, M.; Bahcall, N. A.; Bizyaev, D.; Brewington, H.; Bundy, K.; da Costa, L. N. A.; Ebelke, G.; Malanushenko, E.; Malanushenko, V.; Oravetz, D.; Rossi, G.; Simmons, A.; Snedden, S.; Streblyanska, A.; Thomas, D., "The Clustering of Galaxies in the SDSS-III Baryon Oscillation Spectroscopic Survey: Luminosity and Color Dependence and Redshift Evolution", The Astrophysical Journal 2013, 767, 122-140

38. Senevirathna, W.; Sauvé, G. "Introducing 3D conjugated acceptors with intense red absorption: homoleptic metal (II) complexes of di(phenylacetylene) azadipyrromethene", J. Mater. Chem. C, 2013, 1, 6684-6694.

39.  Fernando, R.; Mao, Z.; Sauvé, G. "Rod-like oligomers incorporating 2,6-dialkylamino core-substituted naphthalene diimide as acceptors for organic photovoltaic" Org. Electron., 2013, 14, 1683-1692.

40. Daddario, C.; Han, Q.; Mao, Z.; Sauve, G.  "Azadipyrromethene-based Dyes for Organic Solar Cell Applications: Effect of Ethynylthiophene Substitution at the Distal or Proximal Phenyls."  Ohio Inorganic Weekend, University at Dayton, Dayton, Ohio, November 15-16, 2013, Submitted poster.

41. Fernando, R.; Mao, Z.; Sauve, G. "Core-substituted Naphthalene Diimide-based Macromolecules" Annual Symposium on Advances in Organic Photovoltaics, Kent State University, Kent, OH, United States, April 17, 2013; Submitted poster. 

42. Yingfang Ma, et al., “Optical Properties and  van der Waals – London Dispersion  Interactions in  Inorganic and Biomolecular Assemblies,” presented at the Materials Research Society Fall Conference, Boston, MA, Dec-2013

43. Yang Hu et al., “Introduction to Solar Durability and Lifetime Extension Center’s Global SunFarm Network,” presented at the BAPVC TaskForce Meeting, San Diego, CA, 06-May-2013.

44. Yang Hu, Mohammad A. Hosain, Tarun Jain, Lauren Elkin, G.Q. Zhang, and Roger H. French, “An Introduction to Solar Durability and Lifetime Extension Center’s Global SunFarm Network,” presented at the CWRU’s Research ShowCase, Case Western Reserve University, 12-Apr-2013

45. Roger H. French, Laura S. Bruckman, Timothy J. Peshek, Yifan Xu, Yang Hu, Nicholas R. Wheeler, Jiayang Sun, Andreas Meisel, Thomas Dang, David Meakin, “Introduction to Solar Durability and Lifetime Extension Center’s Global SunFarm Network,” presented at the BAPVC TaskForce Meeting, San Diego, CA, 06-May-2013

46. Roger H. French and Nicole F. Steinmetz, “Long Range van der Waals-London Dispersion Interactions for Biomolecular and Inorganic Nanoscale Assembly,” presented at the DOE-BES-Biomolecular Materials Program, PIs Meeting, Gaithersburg MD, 19-Aug-2013

47. Roger H. French, “Invited: Electronic Structure of Al2O3 and its Anion and Cationic Brethren,” presented at the Symposium in Honor of Arthur Heuer, CWRU, Cleveland OH, 29-Apr-2016.

48. Roger H. French, “Invited: Reliability‐Driven New Energy Materials Design: Informed by Big Data Analytics,” presented at the DOE SunShot Energy Materials Network Workshop, Washington, D.C., 09-Mar-2016

49. Roger H. French, “Invited: From Quanta to the Continuum: Opportunities for Mesoscale Science (BESAC Report),” presented at the DOE-BES-Biomolecular Materials Program, PIs Meeting, Gaithersburg MD, 19-Aug-2013

50. Devin Gordon, L.S. Bruckman, and R. H. French, “Standardizing the Accelerated Aging of Cool Roofing Materials,” presented at the Northeast Ohio Undergraduate Polymer Symposium, 01-Aug-2013

51. Yang Hu, Dave Hollingshead, Mohammad A Hossain, Mark Schuetz, and Roger French, “Comparison of multi-crystalline silicon PV modules’ performance under augmented solar irradiation,” in MRS Proceedings, 2013, vol. 1493, pp. mrsf12–1493

52. N. R. Wheeler et al., “Statistical and domain analytics for informed study protocols,” in 2013 IEEE Energytech, 2013, pp. 1–7 

53. Nicholas R. Wheeler et al., “Degradation pathway models for photovoltaics module lifetime performance,” in Photovoltaic Specialists Conference (PVSC), 2013 IEEE 39th, 2013, pp. 3185–3190

54. I.V. Kidd, L.S. Bruckman, M.P. Murray, and R.H. French, “Object dependent properties of mirrors for PV applications studied under accelerated weathering protocols,” in Photovoltaic Specialists Conference (PVSC), 2013 IEEE 39th, 2013, pp. 1554–1558.

55. Y. Hu et al., “Global SunFarm data acquisition network, energy CRADLE, and time series analysis,” presented at the 2013 IEEE Energytech, Cleveland, OH, 2013, pp. 1–5

56. Heather M. Lemire, Kelly A. Peterson, Samuel Sprawls, Kenneth Singer, Ina T. Martin, and Roger H. French, “Degradation of Transparent Conductive Oxides: Mechanistic Insights Across Configurations and Exposures,” in Proc. of SPIE, 2013, vol. 8825, p. 882502.

57. Heather M Lemire, Kelly A Peterson, Mona S Breslau, Kenneth D Singer, Ina T Martin, and Roger H French, “Degradation of Transparent Conductive Oxides, and the Beneficial Role of Interfacial Layers,” in MRS Online Proceedings Library, 2013, vol. 1537, pp. mrss13–1537

58. L. S. Bruckman, N. R. Wheeler, I. V. Kidd, J. Sun, and R. H. French, “Photovoltaic Lifetime and Degradation Science Statistical Pathway Development: Acrylic Degradation,” in Proc. SPIE 8825, Reliability of Photovoltaic Cells, Modules, Components, and Systems VI, 2013, p. 88250D

59. Rick F. Rajter, Roger H. French, W. Y. Ching, Rudolf Podgornik, and V. Adrian Parsegian, “Chirality-dependent properties of carbon nanotubes: electronic structure, optical dispersion properties, Hamaker coefficients and van der Waals-London dispersion interactions,” RSC Adv., no. 3, pp. 823–842, 2013

60. L. S. Bruckman et al., “Statistical and Domain Analytics Applied to PV Module Lifetime and Degradation Science,” IEEE Access, vol. 1, pp. 384–403, 2013.

61. Amy M Wen, Pooja H Rambhia, Roger H French, and Nicole F Steinmetz, “Design rules for nanomedical engineering: from physical virology to the applications of virus-based materials in medicine,” Journal of biological physics, vol. 39, no. 2, pp. 301–325, 2013