Publications - 2024

M. Mika, N. Tomczak, C. Finney, J. Carter, A. Aitkaliyeva, "Automating selective area electron diffraction phase identification using machine learning", Journal of Materiomics, 2024, doi:10.1016/j.jmat.2023.12.010.

Zhuo Chen, Jean-Eudes Dazard, Yassin Khalifa, Issam Motairek, Catherine Kreatsoulas, Sanjay Rajagopalan, Sadeer Al-Kindi, "Deep Learning–Based Assessment of Built Environment From Satellite Images and Cardiometabolic Disease Prevalence", JAMA Cardiol, 2024, doi:10.1001/jamacardio.2024.0749.

Ahmed Tahseen Minhaz, Faruk H. Orge, David L. Wilson, Mahdi Bayat, "Assessment of intraocular foreign body using high resolution 3D ultrasound imaging", Sci Rep, 2024, doi:10.1038/s41598-024-62362-y.

Sameera Nalin Venkat, Thomas G. Ciardi, Mingjian Lu, Preston C. DeLeo, Jube Augustino, Adam Goodman, Jayvic Cristian Jimenez, Anirban Mondal, Frank Ernst, Christine A. Orme, Yinghui Wu, Roger H. French, Laura S. Bruckman, "A General Materials Data Science Framework for Quantitative 2D Analysis of Particle Growth from Image Sequences", Integr Mater Manuf Innov, 2024, doi:10.1007/s40192-024-00342-w.

Kristen J. Hernandez, Erika I. Barcelos, Jayvic C. Jimenez, Arafath Nihar, Pawan K. Tripathi, Brian Giera, Roger H. French, Laura S. Bruckman, "A data integration framework of additive manufacturing based on FAIR principles", MRS Advances, 2024, doi:10.1557/s43580-024-00874-5.

Hein Htet Aung, Jayvic Cristian Jimenez, Brian Au, Pigeon Caviness, Robert Cerda, Quynh D. Tran, Pawan Tripathi, Brian Giera, Roger H. French, Laura S. Bruckman, "Towards a study protocol: A data-driven workflow to identify error sources in direct ink write mechatronics", MRS Advances, 2024, doi:10.1557/s43580-024-00846-9.

Xuan Xu, Alyssa Charrier, Sunny Congrove, David A. Buchner, "Cell-state dependent regulation of PPARγsignaling by ZBTB9 in adipocytes", 2024, doi:10.1101/2024.03.04.583402.

Nathan A. Kaib, Alex Parsells, Simon Grimm, Billy Quarles, Matthew S. Clement, "More realistic planetesimal masses alter Kuiper belt formation models and add stochasticity", Icarus, 2024, doi:10.1016/j.icarus.2024.116057.

Luis A. Ortiz‐Rodríguez, Naishka E. Caldero‐Rodríguez, Sourav Kanti Seth, Karitza Díaz‐González, Carlos E. Crespo‐Hernández, "Electronic relaxation mechanism of 9‐methyl‐2,6‐diaminopurine and 2,6‐diaminopurine‐2′‐deoxyribose in solution", Photochem & Photobiology, 2023, doi:10.1111/php.13887.

Karina Theresa Dsouza, "The Effects of Socket Fit and Residual-Limb Load on 3-Dof, Simultaneous and Proportional, Myo-Prosthesis Hand Control and Chronically Implanted, Intramuscular EMG Patterns", 2023, link

Weiqi Yue, Mohommad Redad Mehdi, Pawan K. Tripathi, Matthew A. Willard, Frank Ernst, Roger H. French, "Exploring 2D X-ray diffraction phase fraction analysis with convolutional neural networks: Insights from kinematic-diffraction simulations", MRS Advances, 2024, doi:10.1557/s43580-024-00862-9.

Olatunde D. Akanbi, Deepa C. Bhuvanagiri}, Erika I. Barcelos, Arafath Nihar, Jeffrey M. Yarus, Roger H. French, "Harnessing Satellite Imagery and Geospatial Analysis for Sustainable Nutrient Management in Agricultural Systems", 2024, doi:10.21203/rs.3.rs-4541840/v1.

Olatunde D. Akanbi, Deepa C. Bhuvanagiri, Erika I. Barcelos, Arafath Nihar, Brian Gonzalez Hernandez, Jeffrey M. Yarus, Roger H. French, "Integrating Multiscale Geospatial Analysis for Monitoring Crop Growth, Nutrient Distribution, and Hydrological Dynamics in Large-Scale Agricultural Systems", J geovis spat anal, 2024, doi:10.1007/s41651-023-00164-y.

Weiqi Yue, Pawan K. Tripathi, Gabriel Ponon, Zhuldyz Ualikhankyzy, Donald W. Brown, Bjorn Clausen, Maria Strantza, Darren C. Pagan, Matthew A. Willard, Frank Ernst, Erman Ayday, Vipin Chaudhary, Roger H. French, "Phase Identification in Synchrotron X-ray Diffraction Patterns of Ti–6Al–4V Using Computer Vision and Deep Learning", Integr Mater Manuf Innov, 2024, doi:10.1007/s40192-023-00328-0.

Yangxin Fan, Raymond Wieser, Xuanji Yu, Yinghui Wu, Laura S. Bruckman, Roger H. French, "Using spatio-temporal graph neural networks to estimate fleet-wide photovoltaic performance degradation patterns", PLoS ONE, 2024, doi:10.1371/journal.pone.0297445.

Hridoy Debnath, Pavel Fileviez Pérez, Kevin González-Quesada, "Majorana neutrinos and dark matter from anomaly cancellation", Phys. Rev. D, 2024, doi:10.1103/PhysRevD.109.115030.

Sergei Prokvolit, Erqian Mao, Thomas G. Gray, "Early events in the mechanism of single-source chemical vapor deposition of zirconium and hafnium diboride: a computational investigation", Phys. Chem. Chem. Phys., 2024, doi:10.1039/D3CP05385G.

Drace Penley, Hazel Gerber, Mounesha N. Garaga, Nalinda P. Wickramasinghe, Steven G. Greenbaum, Edward J. Maginn, Yong Zhang, Burcu Gurkan, "Impact of fluorination on Li+ solvation and dynamics in ionic liquid-hydrofluoroether locally concentrated electrolytes", Journal of Power Sources, 2024, doi:10.1016/j.jpowsour.2023.233984.

Ping Wang, Audrey Lynn, Kristy Miskimen, Yeunjoo E. Song, Thomas Wisniewski, Mark Cohen, Brian S. Appleby, Jiri G. Safar, Jonathan L. Haines, "Genome‐wide association studies identify novel loci in rapidly progressive Alzheimer's disease", Alzheimer's & Dementia, 2024, doi:10.1002/alz.13655.

Raj S. Mukkamala, Michael J. A. Hore, "Simulation and Analysis of Molecular Bottlebrush Dynamics in Dilute Solutions", Macromolecules, 2024, doi:10.1021/acs.macromol.3c02259.

Andreas Seas, M. Sohail Noor, Ki Sueng Choi, Ashan Veerakumar, Mosadoluwa Obatusin, Jacob Dahill-Fuchel, Vineet Tiruvadi, Elisa Xu, Patricio Riva-Posse, Christopher J. Rozell, Helen S. Mayberg, Cameron C. McIntyre, Allison C. Waters, Bryan Howell, "Subcallosal cingulate deep brain stimulation evokes two distinct cortical responses via differential white matter activation", Proc. Natl. Acad. Sci. U.S.A., 2024, doi:10.1073/pnas.2314918121.

Fan Fan, Georgia Martinez, Thomas DeSilvio, John Shin, Yijiang Chen, Jackson Jacobs, Bangchen Wang, Takaya Ozeki, Maxime W. Lafarge, Viktor H. Koelzer, Laura Barisoni, Anant Madabhushi, Satish E. Viswanath, Andrew Janowczyk, "CohortFinder: an open-source tool for data-driven partitioning of digital pathology and imaging cohorts to yield robust machine-learning models", npj Imaging, 2024, doi:10.1038/s44303-024-00018-2.

Yue Xu, Martina Stella, Stefan Knecht, Fabijan Pavosevic, Vijay Krishna, "Polyhydroxy Fullerene, Fullerol, Fullerenol or Polyoxy Fullerene? A Combined Experimental and Theoretical Interrogation", 2024, doi:10.26434/chemrxiv-2024-f301n.

Niloufar Dadkhah, Walter R. L. Lambrecht, "Band structure and excitonic properties of WSe2 in the isolated monolayer limit in an all-electron approach", Phys. Rev. B, 2024, doi:10.1103/PhysRevB.109.195155.

Ozan Dernek, Santosh Kumar Radha, Jerome Jackson, Walter R. L. Lambrecht, "Electronic structure and magnetism in P4/nmm KCoO2", Phys. Rev. B, 2024, doi:10.1103/PhysRevB.109.184442.

Claudio Garcia, Santosh Kumar Radha, Swagata Acharya, Walter R. L. Lambrecht, "Quasiparticle band structure and excitonic optical response in V2O5 bulk and monolayer", 2024, doi:10.48550/arXiv.2403.05473.

Walter R. L. Lambrecht, "Spinel LiGa5O8 prospects as ultra-wideband-gap semiconductor: Band structure, optical properties, and doping", Journal of Vacuum Science & Technology A, 2024, doi:10.1116/6.0003117.

Austin Ngo, Kristen Hernandez, Ayorinde E. Olatunde, Thomas G. Ciardi, Alex Harding, Arafath Nifar, Anirban Mondal, Roger H. French, Laura S. Bruckman, John J. Lewandowski, "Image-Based Fracture Surface Defect Characterization Methods for Additively Manufactured Ti-6Al-4V Tested in Fatigue", JOM, 2024, doi:10.1007/s11837-024-06655-7.

Jorind Beqari, Joseph Powell, Jacob Hurd, Alexandra L. Potter, Meghan McCarthy, Deepti Srinivasan, Danny Wang, James Cranor, Lizi Zhang, Kyle Webster, Joshua Kim, Allison Rosenstein, Zeyuan Zheng, Tung Ho Lin, Jing Li, Zhengyu Fang, Yuhang Zhang, Alex Anderson, James Madsen, Jacob Anderson, Anne Clark, Margaret E. Yang, Andrea Nurko, Areej R. El-Jawahri, Thoralf M. Sundt, Serguei Melnitchouk, Arminder S. Jassar, David D’Alessandro, Nikhil Panda, Lana Y. Schumacher-Beal, Cameron D. Wright, Hugh G. Auchincloss, Uma M. Sachdeva, Michael Lanuti, Yolonda L. Colson, Nathaniel Langer, Asishana Osho, Chi-Fu Jeffrey Yang, Xiao Li, "A Pilot Study Using Machine Learning Algorithms and Wearable Technology for the Early Detection of Postoperative Complications After Cardiothoracic Surgery", Annals of Surgery, 2024, doi:10.1097/SLA.0000000000006263.

Siyuan Hu, Zhilang Qiu, Richard James Adams, Walter Zhao, Rasim Boyacioglu, Daniela Calvetti, Debra McGivney, Dan Ma, "Efficient pulse sequence design framework for high‐dimensional MR fingerprinting scans using systematic error index", Magnetic Resonance in Med, 2024, doi:10.1002/mrm.30155.

Jessica Walthew, Sarah Barack, Nishan M. Senanayake, Sarah J. Lavin, Hannah G. Dorris, Jennifer L.W. Carter, Ina T. Martin, "Imaging Analysis of Scratch Reduction in Poly (Methyl Methacrylate) (PMMA) Plastic with NOVUS Polishing Products", Studies in Conservation, 2023, doi:10.1080/00393630.2023.2173040.

Brian Maxwell, Rémy Mével, Josué Melguizo-Gavilanes, "Spherically expanding flame simulations using Cantera coupled to an unsteady Lagrangian formulation", International Journal of Hydrogen Energy, 2024, doi:10.1016/j.ijhydene.2023.06.336.

William C Oltjen, "Identifying Performance Loss Mechanisms in Photovoltaic Timeseries and UV Fluorescence Image Datasets Adhering to FAIR Principles", 2023, link

Quinn Taylor, Glenn D. Starkman, Michael Hinczewski, Deyan P. Mihaylov, Joseph Silk, Jose de Freitas Pacheco, "Extremal Kerr black hole dark matter from Hawking evaporation", Phys. Rev. D, 2024, doi:10.1103/PhysRevD.109.104066.

Suraj Kumar, Raymond Wieser, Benjamin Pierce, "pvplr-python: Python package implementation of PVplr for Performance Loss Rate (PLR) analysis", Photovoltaic Specialists Conference 52 Seattle, WA, 2024, doi:10.2172/2376168.

Prathyush Chirra, Joseph Sleiman, Namita S Gandhi, Ilyssa O Gordon, Mohsen Hariri, Mark Baker, Ronald Ottichilo, David H Bruining, Jacob A Kurowski, Satish E Viswanath, Florian Rieder, "Radiomics to Detect Inflammation and Fibrosis on Magnetic Resonance Enterography in Stricturing Crohn’s Disease", Journal of Crohn's and Colitis, 2024, doi:10.1093/ecco-jcc/jjae073.

Joshua Smith, Manuel Viqueira-Moreira, Christoph Brehm, Bryan E. Schmidt, "Simulation of Hypervelocity Water Entry by Spherical Projectiles", AIAA SCITECH 2024 Forum, 2024, doi:10.2514/6.2024-2724.

Stephanie Glass Clark, C. Emi Bretschneider, Megan S. Bradley, Stephen Rhodes, Jonathan Shoag, David Sheyn, "Risk of postoperative mesh exposure following sacrocolpopexy with supracervical versus total concomitant laparoscopic hysterectomy", Int Urogynecol J, 2023, doi:10.1007/s00192-023-05658-3.

A. Bocchinfuso, D. Calvetti, E. Somersalo, "Bayesian sparsity and class sparsity priors for dictionary learning and coding", Journal of Computational Mathematics and Data Science, 2024, doi:10.1016/j.jcmds.2024.100094.

Yash Khasbage, Daniel Alcaraz Carrión, Jennifer Hinnell, Frankie Robertson, Karan Singla, Peter Uhrig, Mark Turner, "The Red Hen Anonymizer and the Red Hen Protocol for de-identifying audiovisual recordings", Linguistics Vanguard, 2022, doi:10.1515/lingvan-2022-0017.

Farshad Niazi, Kimberly A Parker, Sara J Mason, Salendra Singh, William P Schiemann, Saba Valadkhan, "Induction of Invasive Basal Phenotype in Triple-Negative Breast Cancers by Long Noncoding RNA BORG", 2024, doi:10.20944/preprints202406.1624.v1.

Andrius Tamosiunas, Fernando Cornet-Gomez, Yashar Akrami, Stefano Anselmi, Javier Carrón Duque, Craig J. Copi, Johannes R. Eskilt, Özenç Güngör, Andrew H. Jaffe, Arthur Kosowsky, Mikel Martin Barandiaran, James B. Mertens, Deyan P. Mihaylov, Thiago S. Pereira, Samanta Saha, Amirhossein Samandar, Glenn D. Starkman, Quinn Taylor, Valeri Vardanyan, "Cosmic topology. Part IVa. Classification of manifolds using machine learning: a case study with small toroidal universes", 2024, doi:10.48550/arXiv.2404.01236.

Michael Kong, Thomas G. DeSilvio, Leo Bao, Brennan Flannery, Benjamin N. Parker, Stephen M. Tang, Murad Labbad, Gregory M. O'Connor, Amit Gupta, Emily Steinhagen, Andrei S. Purysko, William Hall, David Liska, Eric L. Marderstein, Aaron Carroll, Marka Crittenden, Michael Gough, Kristina H. Young, Satish E. Viswanath, "Human-in-the-loop informed deep learning rectal tumor segmentation on pre-treatment MRI", Medical Imaging 2024: Computer-Aided Diagnosis, 2024, doi:10.1117/12.3008637.

Brennan Flannery, Thomas DeSilvio, Amir R. Sadri, Mohsen Hariri, Erick M. Remer, Jane Nguyen, Satish E. Viswanath, "Spatial attention wavelon network (SpAWN) for survival-based risk stratification in kidney cancers via CT", Medical Imaging 2024: Computer-Aided Diagnosis, 2024, doi:10.1117/12.3008727.

Tao Hu, Ammar Hoori, Juhwan Lee, Justin Kim, Yingnan Song, Hao Wu, Sadeer Al-Kindi, Sanjay Rajagopalan, David L. Wilson, "AI predictions of major adverse cardiovascular event using epicardial and paracardial adipose tissue assessments in CT calcium score images", Medical Imaging 2024: Clinical and Biomedical Imaging, 2024, doi:10.1117/12.3006789.

Justin N. Kim, Juhwan Lee, Ananya Subramaniam, Yingnan Song, Hao Wu, Mohamed H. E. Makhlouf, Neda Shafiabadi, Sadeer Al-Kindi, David L. Wilson, "Data-efficient segmentation of coronary arteries for pericoronary adipose tissue analysis on coronary CT angiography using self-supervised learning", Medical Imaging 2024: Clinical and Biomedical Imaging, 2024, doi:10.1117/12.3006038.

Naomi Joseph, Ian Marshall, Elizabeth Fitzpatrick, Harry J. Menegay, Jonathan H. Lass, Beth Ann M. Benetz, David L. Wilson, "Deep learning segmentation of endothelial cell images using an active learning paradigm with guided label corrections", J. Med. Imag., 2024, doi:10.1117/1.JMI.11.1.014006.

Ammar Hoori, Sadeer Al-Kindi, Tao Hu, Yingnan Song, Hao Wu, Juhwan Lee, Nour Tashtish, Pingfu Fu, Robert Gilkeson, Sanjay Rajagopalan, David L. Wilson, "Enhancing cardiovascular risk prediction through AI-enabled calcium-omics", Sci Rep, 2024, doi:10.1038/s41598-024-60584-8.

Naomi M. Joseph, Chaitanya Kolluru, James Seckler, Jun Chen, Justin Kim, Michael Jenkins, Andrew Shofstall, Nikki Pelot, David L. Wilson, "Human microscopic vagus nerve anatomy using deep learning on 3D-MUSE images", Medical Imaging 2024: Clinical and Biomedical Imaging, 2024, doi:10.1117/12.3009682.

Joshua Freeze, Ammar Hoori, Prerna Singh, Tao Hu, Robert Gilkeson, Sadeer Al-Kindi, Sanjay Rajagopalan, Shuo Li, David L. Wilson, "Prediction of heart failure using an analysis of epicardial adipose tissue from CT calcium score images", Medical Imaging 2024: Clinical and Biomedical Imaging, 2024, doi:10.1117/12.3006861.

Prerna Singh, Ammar Hoori, Joshua Freeze, Sadeer Al-Kindi, Sanjay Rajagopalan, David L. Wilson, "Propensity-matching of patients from a large database of CT calcium score images reveals a distinct coronary calcification profile in diabetes mellitus", Medical Imaging 2024: Clinical and Biomedical Imaging, 2024, doi:10.1117/12.3005974.

Hao Wu, Yingnan Song, Ammar Hoori, Ananya Subramaniam, Juhwan Lee, Justin Kim, Sadeer Al-Kindi, Chun-Ho Yun, Sanjay Rajagopalan, David Wilson, "Translating non-contrast CT calcium score images to virtual CCTA to aid segmentation of coronary arteries and myocardium", Medical Imaging 2024: Clinical and Biomedical Imaging, 2024, doi:10.1117/12.3006516.

Jon Butterworth, Hridoy Debnath, Pavel Fileviez Perez, Yoran Yeh, "Dark Matter from Anomaly Cancellation at the LHC", 2024, doi:10.48550/arXiv.2405.03749.

Yuran Zhu, Guanhua Wang, Yuning Gu, Walter Zhao, Jiahao Lu, Junqing Zhu, Christina J. MacAskill, Andrew Dupuis, Mark A. Griswold, Dan Ma, Chris A. Flask, Xin Yu, "3D MR Fingerprinting for Dynamic Contrast-Enhanced Imaging of Whole Mouse Brain", 2024, doi:10.48550/arXiv.2405.00513.

M. Mehraeen, Steven S.-L. Zhang, "Proximity-induced nonlinear magnetoresistances on topological insulators", Phys. Rev. B, 2024, doi:10.1103/PhysRevB.109.024421.