Helpful References

Since HPC employs Linux OS, it is recommended for users to master basic Linux commands. Also, users may want to have quick reference guide for some topics of interest related to HPC. Please follow the links given below for basic information on Linux, Parallel computing, Parallel Programs, debugging, compiling, and linking, Software installation, special job submission, and many more. The list is intended to evolve with time. So, check it out frequently. Contact us at  hpc-supportATcase.edu

Topics under References:

• HPC Environment

  • Introduction to Linux

  • Changing Linux Shell

  • Batch Job & Interactive Job Submissions

  • Monitoring & Deleting Jobs

  • Submitting & Managing Multiple Jobs

  • Transferring Files

  • Guide to Installing Software in Home Directory

  • Sharing Files

  • Recovering Files

  • Temporary or Scratch Spaces

  • JAVA Applet

  • High Resolution Image

  • Sharing, Reproducing, and Contributing using GitHub

• Programming

  • Basic Programming

  • Code Optimization

  • Compiling & Linking

  • Memory Estimation using Valgrind Utility @HPC

  • Debugging Segmentation Faults

  • Designing and Building Parallel Programs

  • Parallelizing & adding GPU capability to basic C++ Code

• Applications

  • Data Science

  • Digital Signal Processing

  • Finite Element Methods & Analysis

  • Genomics @ HPC 

  • GNUPlot Tutorial

  • Molecular Modeling & Visualization 

  • Neural Network, Machine Learning & Deep Learning

  • Quantum Chemistry & Quantum Physics

• Additional Resources

  • Open Science Framework (OSF)

  • Scientific Computing Environment