Publications - 2009

Y. Chen, P. L. Taylor, and D. A. Scherson "Electrochemical and In-Situ Optical Studies of Supported Iridium Oxide Films in Aqueous Solutions" J. Electrochem. Soc. 156 (1) F14-F21 (2009) Link to article

E. Allahyarov and P. L. Taylor "Predicted field-induced hexatic structure in an ionomer membrane" Phys. Rev. E. 80 020801 (2009) Link to article

E. Allahyarov, P. L. Taylor, and H. Löwen "Simulation study of sulfonate cluster swelling in ionomers" Phys. Rev. E. 80 061802 (2009) Link to article

E. Allahyarov and P. L. Taylor, "Simulation Study of the correlation between structure and conductivity in stretched Nafion" J. Phys. Chem. B 113, 610-617 (2009)  Link to article

K. Kamal, G. Mittal, and C.J. Sung, "Autoignition of n-Decane under Elevated Pressure and Low-to-Intermediate Temperature Conditions" Combustion and Flame 156, 1278-1288 (2009) Link to article

X-L Yin and J Li, "A general graphical framework for detecting copy number variation" Accepted by Comput Syst Bioinformatics Conf (CSB2009) - http://csb2009.org/pdf/060Li.pdf

X. Li and J. Li, "An almost linear time algorithm for a general haplotype solution on tree pedigrees with no recombination and its extensions" Journal of Bioinformatics and Computational Biology (JBCB), 7(3), 521-545 (2009) Link to article

H. Djohari and E.E. Dormidontova, "Dissipative Particle Dynamics Simulations of Nanoparticle Targeting Dynamics" Poster at CWRU Research ShowCASE 2009

H. Djohari and E.E. Dormidontova, "Dissipative Particle Dynamics Simulations of Micelle Targeting Dynamics" Central Regional Meeting of ACS, Cleveland, OH, May 2009

H. Djohari and E.E. Dormidontova, "Kinetics of Nanoparticle Targeting by Dissipative Particle Dynamics Simulations" Biomacromolecules, available online (2009) - http://pubs.acs.org/doi/abs/10.1021/bm900785c

Gavin A. Buxton, Sandra L. Siedlak, George Perry and Mark A. Smith. There and Back Again: A Numerical Tale of Microtubule Dynamics. Submitted.

Gavin A. Buxton, Alexander Alexeev, O. Berk Usta and Anna C. Balazs. Using Synthetic Cilia to Regulate the Transport of Microscopic Particles. Submitted.

Rajat Ghosh, Gavin A. Buxton, O. Berk Usta, Anna C. Balazs, and Alexander Alexeev. Designing oscillating cilia that capture or release microscopic particles. Accepted in Langmuir.

Ernest Durbin and Gavin A. Buxton. Controlling Drug Release using Responsive Polymer Core-Shell Nanoparticles. Submitted to Soft Matter: Responsive and Active Soft Materials issue.

Gavin A. Buxton, N. Clarke and P. J. Hussey. Actin Dynamics and the Elasticity of Cytoskeletal Networks. Accepted in Express Polymer Letters.

Gavin A. Buxton, Ultrathin, dynamic and groovy: the physics of Dutcher films. Annu. Rep. Prog. Chem., Sect. C: Phys. Chem. (2009)

Yang J, Ma YQ, Page RC, Misra S, Plow EF, Qin J. Structure of an integrin alphaIIb beta3 transmembrane-cytoplasmic heterocomplex provides insight into integrin activation. Proc Natl Acad Sci U S A. 2009 Oct 20;106(42):17729-34. Epub 2009 Oct 1. PubMed PMID: 19805198; PubMed Central PMCID: PMC2764936.

Kalp, M., Bethel. C. R., Bonomo, R. A. and Carey, P. R. "Why extended-spectrum beta-lactamases SHV-2 and SHV-5 are "hypersusceptible" to mechanism-based inhibitors". Biochemistry, 48, 9912-9920 (2009).

Kalp, M., Totir, M. A., Buynak, J. D., and Carey, P. R. "Different intermediate populations formed by tazobactam, sulbactam, and clavulanate reacting with SHV-1 beta-lactamases: Raman crystallographic evidence." J. Amer. Chem. Soc, 131, 2338-2347 (2009).

Qingfu Feng, Joseph Abraham, Tao Feng, Yeunjoo Song, Robert C Elston, Xiaofeng Zhu, BMC Genetics. In press

“Predicting Reversible Potentials of Reactions on Electrode Surfaces from Internal and Gibbs Energies”, Talk given by A. B. Anderson, at the 38th Great Lakes Regional Meeting of the American Chemical Society, Lincolnshire Il May13-16, 2009.

“Theories for Predicting Reversible Potentials of Reactions on Electrode Surfaces from Internal and Gibbs Energies: Applications to ORR”, talk given by A. B. Anderson at Brookhaven National Laboratory, August 26, 2009.

“Theories for Predicting Reversible Potentials of Reactions on Electrode Surfaces from Internal and Gibbs Energies: Applications to ORR”, talk given by A. B. Anderson at the Pittsburgh-Cleveland Catalysis Society Meeting, October 9, 2009.

"Theory for Coverage Dependence of Reversible Potential for H2O Oxidation on Pt(111) in Acid", F. Tian, and A. B. Anderson, poster presentation at the 215th Electrochemical Society Meeting, San Francisco CA May 24-29, 2009.

“Electroreduction of O2 on Selenium Nanotubes: Theoretical Prediction”, K. A. Kurak and A. B. Anderson, poster presentation at the 215th Electrochemical Society Meeting, San Francisco CA May 24-29, 2009.

F. Tian, R. Jinnouchi, and A. B. Anderson, “How Potentials of Zero Charge and Potentials for Water Oxidation to OH(ads) on Pt(111) Electrodes Vary With Coverage”, J. Phys. Chem. C 113, 17484-17492 (2009).

Rudick, C.S., Mihos, J.C., Frey, L.H. , and McBride, C.K., "Tidal Streams of Intracluster Light", The Astrophysical Journal, 699, 1518 (2009)

Elshad Allahyarov and Philip L. Taylor, "Predicted electric-field-induced hexatic structure in an ionomer membrane", Phys. Rev. E 80, 020801(R) (2009)

Elshad Allahyarov, Philip L. Taylor, and Hartmut Löwen, "Simulation study of sulfonate cluster swelling in ionomers", Phys. Rev. E 80, 061802 (2009)

Morris NJ, Elston RC and Stein CM. “Calculating Asymptotic Significance Levels of the Constrained Likelihood Ratio Test with Application to Multivariate Genetic Linkage Analysis.” Statistical Applications in Genetics and Molecular Biology, v. 8 issue 1, 2009, p. 39.

Morris NJ, Elston RC and Stein CM (2009) Robust Score Tests for Multivariate Linkage Analysis. Poster presentation at the 2009 Meeting of the American Society of Human Genetics.

S.J. Fleming, H.F. McGinnis, S. Sarkar, H. Baskaran, & P.J. Thomas. "Analysis of gradient sensing based on maximum likelihood." Poster presented to conference of the Society for Mathematical Biology.  Vancouver, Canada. July 2009. 

"Using Intracluster Light to Weigh Galaxy Clusters", conference talk by Chris Mihos at the international conference "Unveiling the Mass: Extracting and Interpreting Galaxy Masses", Kingston, Ontario, June 2009.

Kalp, M., Buynak, J. D. and Carey, P. R. "Role of E166 in the Imine to Enamine Tautomerism of the Cllinical beta-Lactamase Inhibitor Sulbactam" Biochemistry, (2009) 48, 10196-98.

Guo, M., Spitale, R. C., Volpini, R., Krucinska, J., Cristalli, G., Carey, P. R., and Wedekind, J. E. "Direct Raman Measurement of an Elevated Base pKa in the Active Site of a Small Ribozyme in a Pre-Catalytic Conformation" J. Amer. Chem. Soc., (2009) 131, 12908-9.

Chen, J.-H., Gong, B., Bevilacqua, P. C., Carey, P. R., and Golden, B. L. "A Catalytic Metal Interacts with the Cleavage Site G.U Wobble in the HDV Ribozyme" Biochemistry, (2009) 48, 498-507.

Gong, B., Chen, J.-H., Yajima, R., Chen, Y., Chase, E., Chadalavada, D. M., Golden, B. L., Carey, P. R., Bevilacqua, P. C. "Raman crystallography of RNA" Methods, (2009)

Gong, B., Chen, J. H.,  Golden, B. L., Bevilacqua, P. C., and Carey, P. R. “Competition Between Co(NH3)63+and Inner-sphere Mg2+in the HDV Ribozyme”. Biochemistry., (2009) 48: 11961-70

Y.-T. Tseng and J. S. T'ien: The Effect of Different Pyrolysis Descriptions on flame spread over Solids in Concurrent Flows, 6th U.S. National Combustion Meeting, Ann Arbor, Michigan 2009

S.-Y. Hsu, Y.-T. Tseng and J.S. T’ien, “Modeling flame spread and extinction of solids in space exploration atmospheres,” International Conference on Environmental Systems, Fire Safety in Spacecraft and Enclosed Habitats, 09ICES-0333/2009-01-2492, 2009

Kyle E. Niemeyer, Chih-Jen Sung, Mandhapati P. Raju, "Skeletal mechanism generation for surrogate fuels using directed relation graph with error propagation and sensitivity analysis," Combustion and Flame 57 (2010) 1760-1770. doi:10.1016/j.combustflame.2009.12.0

G. Karl Steinke and Roberto F. Galán (2009). Reverse-engineering neural network topology from large-scale recording dynamics. Program No. 895.15. 2009 Neuroscience Meeting Planner. Chicago, IL: Society for Neuroscience, 2009. Online. SfN 39th Annual Meeting, October 17-21, 2009.

G. Karl Steinke and Roberto F. Galán (2009). Inferring large-scale brain connectivity from spectral properties of the EEG. Computational Neuroscience Meeting, CNS 2009, Berlin, Germany.