Publications - 2019
2019
Shang, S., Yang, J., Jazaeri, AA., Duval, AJ., Tufan, T., Lopes, F., Benamar, M., Guessous, F., Lee, I., Campbell, RM., Ebert, PJ., Abbas, T., Landen, CN., DiFeo, A., Scacheri, PC., Adli, M., "Chemotherapy-induced distal enhancers drive transcriptional program to maintain the chemoresistant state in ovarian cancer.", Cancer Res, 2019 doi:10.1158/0008-5472.CAN-19-0215 PMID:31358529
Braid, J.L., "Accurate Linear I-V Extraction of Ideality, Series and Shunt Resistances", 2019 IEEE 46th Photovoltaic Specialist Conference (PVSC), 2019
Braid, J.L., "Accurate Linear I-V Extraction of Ideality, Series and Shunt Resistances", IEEE 46th Photovoltaic Specialist Conference (PVSC), Chicago, Illinois, USA, 2019 (poster)
Wang, M., Curran, A.J., Schneller, E.J., Dai, J., Pradhan, A., Qin, S., Anderson, E.L., M., S.M., Sazally, M.S., Bruckman, L.S., Davis, K.O., Huey, B.D., Jaubert, J.-N., French, R.H., Braid, J.L., "Degradation of PERC and Al-BSF Photovoltaic Cells with Differentiated Minimodule Packaging Under Damp Heat Exposure", IEEE 46th Photovoltaic Specialist Conference (PVSC), Chicago, Illinois, USA, 2019
Bruckman, L.S., "Transformative Opportunities from Data Science and Big Data Analytics: Applied to Photovoltaics", The Electrochemical Society Interface, 28(1):57-61, 2019 doi:10.1149/2.F07191if
Gok, A., Gordon, D.A., Burns, D.M., Fowler, S.P., French, R.H., Bruckman, L.S., "Reciprocity and Spectral Effects of the Degradation of Poly(Ethylene-Terephthalate) under Accelerated Weathering Exposures", Journal of Applied Polymer Science, 136(22):47589-47589, 2019 doi:10.1002/app.47589
Wang, Y., Huang, W., Fairbrother, A., Fridman, L.S., Curran, A.J., Wheeler, N.R., Napoli, S., Hauser, A.W., Julien, S., Gu, X., O`Brien, G.S., Wan, K., Ji, L., Kempe, M.D., Boyce, K.P., French, R.H., Bruckman, L.S., "Generalized Spatio-Temporal Model of Backsheet Degradation From Field Surveys of Photovoltaic Modules", IEEE Journal of Photovoltaics, 9(5):1374-1381, 2019 doi:10.1109/JPHOTOV.2019.2928700
Gordon, D.A., Zhan, Z., Bruckman, L.S., "Characterizing the weathering induced degradation of Poly(ethylene-terephthalate) using PARAFAC modeling of fluorescence spectra", Polymer Degradation and Stability, 161:85-94, 2019 doi:10.1016/j.polymdegradstab.2019.01.006
Gok, A., Fagerholm, C.L., French, R.H., Bruckman, L.S., "Temporal Evolution and Pathway Models of Poly(Ethylene-Terephthalate) Degradation under Multi-Factor Accelerated Weathering Exposures", PLOS ONE, 14(2):e0212258-e0212258, 2019 doi:10.1371/journal.pone.0212258 PMID:30768646
Li, Z.-L., Buck, M., "Modified Potential Functions Result in Enhanced Predictions of a Protein Complex by All-Atom MD Simulations, Confirming a Step-wise Association Process for Native PPIs", Journal of Chemical Theory and Computation, 2019 doi:10.1021/acs.jctc.9b00195
Li, Z., Buck, M., "Computational Design of Myristoylated Cell Penetrating Peptides Targeting Oncogenic K-Ras.G12D at the Effector Binding Membrane Interface", bioRxiv, pp. 565945, 2019 doi:10.1101/565945
Verma, A.K., Huang, W.-H., Hawk, J.A., Bruckman, L.S., French, R.H., Romanov, V., Carter, J.L.W., "Screening of Heritage Data for Improving Toughness of Creep-Resistant Martensitic Steels", Materials Science and Engineering: A, 763:138142-138142, 2019 doi:10.1016/j.msea.2019.138142
Verma, A.K., Hawk, J.A., Bruckman, L.S., French, R.H., Romanov, V., Carter, J.L.W., "Mapping Multivariate Influence of Alloying Elements on Creep Behavior for Design of New Martensitic Steels", Metallurgical and Materials Transactions A, 2019 doi:10.1007/s11661-019-05234-9
Morrison, R.L., Fensin, S.J., Carter, J.L.W., "Exploration of the sliding behavior of a Σ11 grain boundary with precipitates in Ni–Al system using molecular dynamics", Materialia, 7:100383, 2019 doi:10.1016/j.mtla.2019.100383
Alward, W.L.M., van der Heide, C., Khanna, C.L., Roos, B.R., Sivaprasad, S., Kam, J., Ritch, R., Lotery, A., Igo, R.P., Jr., Cooke Bailey, J.N., Stone, E.M., Scheetz, T.E., Kwon, Y.H., Pasquale, L.R., Wiggs, J.L., Fingert, J.H., Consortium, F.T.NEIGHBORHOOD., "Myocilin Mutations in Patients With Normal-Tension GlaucomaMyocilin Mutations in Patients With Normal-Tension GlaucomaMyocilin Mutations in Patients With Normal-Tension Glaucoma", JAMA Ophthalmology, 137(5):559-563, 2019 doi:10.1001/jamaophthalmol.2019.0005
Misko, T.A., Liu, Y.-T., Harris, M.E., Oleinick, N.L., Pink, J., Lee, H.-Y., Dealwis, C.G., "Structure-guided design of anti-cancer ribonucleotide reductase inhibitors", Journal of Enzyme Inhibition and Medicinal Chemistry, 34(1):438-450, 2019 doi:10.1080/14756366.2018.1545226
Moser, D., Bertani, D., Curran, A.J., French, R.H., Herz, M., Lindig, S., Makrides, G., Müller, B., Richter, M., Iseghem, M.V., Sark, W.G.J.H.M.V., Stein, J.S., Deline, C., "International Collaboration Framework for the Calculation of Performance Loss Rates: Data Quality, Benchmarks, and Trends", 36th European Photovoltaic Solar Energy Conference and Exhibition, pp. 1266-1271, 2019 doi:10.4229/EUPVSEC20192019-5BO.5.1
Fietkiewicz, C., "Potential Influence of Prior Experience in an Undergraduate-Graduate Level HPC Course", Journal of Computational Science Education, 10(1):90-92, 2019 doi:10.22369/issn.2153-4136/10/1/15
Fietkiewicz, C., "Student Outcomes in Parallelizing Recursive Matrix Multiply", Journal of Computational Science Education, 10(1):21-23, 2019 doi:10.22369/issn.2153-4136/10/1/4
Karimi, A.M., Fada, J.S., Hossain, M.A., Yang, S., Peshek, T.J., Braid, J.L., French, R.H., "Automated Pipeline for Photovoltaic Module Electroluminescence Image Processing and Degradation Feature Classification", IEEE Journal of Photovoltaics, 9(5):1324-1335, 2019 doi:10.1109/JPHOTOV.2019.2920732
Ma, X., Huang, W., Schnabel, E., Köhl, M., Brynjarsdóttir, J., Braid, J.L., French, R.H., "Data-Driven I–V Feature Extraction for Photovoltaic Modules", IEEE Journal of Photovoltaics, 9(5):1405-1412, 2019 doi:10.1109/JPHOTOV.2019.2928477
Liu, J., Wang, M., Curran, A.J., Huang, W.-H., Schnabel, E., Köhl, M., Braid, J.L., French, R.H., "Real-world PV Module Degradation across Climate Zones Determined from Suns-Voc, Loss Factors and I-V Steps Analysis of Seven Years of Time-series Pmp, I-V Datastreams", IEEE 46th Photovoltaic Specialist Conference (PVSC), Chicago, Illinois, USA, 2019
Curran, A.J., Birk Jones, C., Lindig, S., Stein, J., Moser, D., French, R.H., "Performance Loss Rate Consistency and Uncertainty Across Multiple Methods and Filtering Criteria", 2019 IEEE 46th Photovoltaic Specialists Conference (PVSC), pp. 1328-1334, 2019 doi:10.1109/PVSC40753.2019.8980928
Liu, J., Wang, M., Curran, A.J., Maroof Karimi, A., Huang, W.-H., Schnabel, E., Köhl, M., Braid, J.L., French, R.H., "Real-World PV Module Degradation across Climate Zones Determined from Suns-Voc, Loss Factors and I-V Steps Analysis of Eight Years of I-V, Pmp Time-Series Datastreams", 2019 IEEE 46th Photovoltaic Specialists Conference (PVSC), pp. 0680-0686, 2019 doi:10.1109/PVSC40753.2019.8980541
Braid, J.L., Schneller, E., Wang, M., Curran, A., Liu, J., Bosco, N., Carter, J., Weiser, R., Bruckman, L., Huey, B., Davis, K., Jaubert, J.-N., French, R.H., "Performance And Stability Of Monofacial and Bifacial PERC Silicon Cells from Mono- and Multi-Crystalline Wafers, with Comparison to Multi-Crystalline Al-BSF Silicon Cells", Symposium EN11—Silicon for Photovoltaics, Boston MA, 2019
Wang, M., Curran, A.J., Schneller, E.J., Dai, J., Pradhan, A., Qin, S., Anderson, E.L., Morrison, S.M., Sazally, M.S., Bruckman, L.S., Davis, K.O., Huey, B.D., Jaubert, J.-N., French, R.H., Braid, J.L., French, R.H., "Degradation of PERC and Al-BSF Photovoltaic Cells with Differentiated Minimodule Packaging Under Damp Heat Exposure", 2019 IEEE 46th Photovoltaic Specialist Conference (PVSC), Chicago IL, USA, 2019
Waksmunski, AR., Igo, RP., Jr., Song, YE., Cooke, B., Laux, R., Fuzzell, D., Fuzzell, S., Adams, LD., Caywood, L., Prough, M., Stambolian, D., Scott, WK., Pericak-Vance, MA., Haines, JL., "Rare variants and loci for age-related macular degeneration in the Ohio and Indiana Amish.", Hum Genet, 138(10):1171-1182, 2019 doi:10.1007/s00439-019-02050-4 PMID:31367973
Romanov, V.N., Krishnamurthy, N., Verma, A.K., Bruckman, L.S., French, R.H., Carter, J.L.W., Hawk, J.A., "Materials Data Analytics for 9% Cr Family Steel", Statistical Analysis and Data Mining: The ASA Data Science Journal, 2019 doi:10.1002/sam.11406
Lenart, W.R., Kong, W., Oltjen, W.C., Hore, M.J.A., "Translocation of soft phytoglycogen nanoparticles through solid-state nanochannels", Journal of Materials Chemistry B, 7(41):6428-6437, 2019 doi:http://dx.doi.org/10.1039/C9TB01048C
Asaeikheybari, G., Green, J., Qian, X., Jiang, H., Huang, M.-C., "Medical Image Learning from A Few/Few Training Samples: Melanoma Segmentation Study", IEEE/ACM 4th International Conference on Connected Health: Applications; Systems and Engineering Technologies, Washington, D.C., USA, 2019
Waksmunski, AR., Grunin, M., Kinzy, TG., Igo, RP., Jr., Haines, JL., Cooke, B., International, A.-R., "Pathway Analysis Integrating Genome-Wide and Functional Data Identifies PLCG2 as a Candidate Gene for Age-Related Macular Degeneration.", Invest Ophthalmol Vis Sci, 60(12):4041-4051, 2019 doi:10.1167/iovs.19-27827 PMID:31560769
Paiva, F., Boromand, A., Maia, J., Secchi, A., Calado, V., Khani, S., "Interfacial aggregation of Janus rods in binary polymer blends and their effect on phase separation", The Journal of Chemical Physics, 151(11):114907, 2019 doi:10.1063/1.5100134
Gil, P.S., Lacks, D.J., "Humidity transforms immobile surface charges into mobile charges during triboelectric charging", Physical Chemistry Chemical Physics, 21(25):13821-13825, 2019 doi:http://dx.doi.org/10.1039/C9CP02398D
Grandhi, S., Gould, L., Wang, J., Grandhi, A., LaFramboise, T., "Mitochondrial genomics in the cancer cell line encyclopedia and a scoring method to effectively pair cell lines for cytoplasmic hybridization", Mitochondrion, 46:256-261, 2019 doi:10.1016/j.mito.2018.07.005
Lyu, S., Liu, Y., Lambrecht, W.R.L., "First-principles calculations of phonon derived Raman and infrared spectra in Be-IV-N2 compounds", IOP Publishing, 52(38):385106, 2019 doi:http://dx.doi.org/10.1088/1361-6463/ab2c90
Lyu, S., Skachkov, D., Kash, K., Blanton, E.W., Lambrecht, W.R.L., "Band Gaps, Band-Offsets, Disorder, Stability Region, and Point Defects in II-IV-N2 Semiconductors", physica status solidi (a), 216(15):1800875, 2019 doi:10.1002/pssa.201800875
Lyu, S., Lambrecht, W.R.L., "Quasiparticle self-consistent GW electronic band structures of Be-IV-N2 compounds", IOP Publishing, 31(33):335501, 2019 doi:http://dx.doi.org/10.1088/1361-648X/ab1fc5
Radha, S.K., Lambrecht, W.R.L., "Band Gaps and Stability of CsSiX3 Halides", physica status solidi (a), 216(15):1800962, 2019 doi:10.1002/pssa.201800962
Laville, V., Kang, J.H., Cousins, C.C., Iglesias, A.I., Nagy, R., Cooke Bailey, J.N., Igo, R.P., Song, Y.E., Chasman, D.I., Christen, W.G., Kraft, P., Rosner, B.A., Hu, F., Wilson, J.F., Gharahkhani, P., Hewitt, A.W., Mackey, D.A., Hysi, P.G., Hammond, C.J., vanDuijn, C.M., Haines, J.L., Vitart, V., Fingert, J.H., Hauser, M.A., Aschard, H., Wiggs, J.L., Khawaja, A.P., MacGregor, S., Pasquale, L.R., "Genetic correlations between diabetes and glaucoma: an analysis of continuous and dichotomous phenotypes", American Journal of Ophthalmology, 2019 doi:10.1016/j.ajo.2019.05.015
Mack, SC., Singh, I., Wang, X., Hirsch, R., Wu, Q., Villagomez, R., Bernatchez, JA., Zhu, Z., Gimple, RC., Kim, LJY., Morton, A., Lai, S., Qiu, Z., Prager, BC., Bertrand, KC., Mah, C., Zhou, W., Lee, C., Barnett, GH., Vogelbaum, MA., Sloan, AE., Chavez, L., Bao, S., Scacheri, PC., Siqueira-Neto, JL., Lin, CY., Rich, JN., "Chromatin landscapes reveal developmentally encoded transcriptional states that define human glioblastoma.", J Exp Med, 216(5):1071-1090, 2019 doi:10.1084/jem.20190196 PMID:30948495
Hung, S., Saiakhova, A., Faber, ZJ., Bartels, CF., Neu, D., Bayles, I., Ojo, E., Hong, ES., Pontius, WD., Morton, AR., Liu, R., Kalady, MF., Wald, DN., Markowitz, S., Scacheri, PC., "Mismatch repair-signature mutations activate gene enhancers across human colorectal cancer epigenomes.", Elife, 8, 2019 doi:pii: e40760. 10.7554/eLife.40760 PMID:30759065
Morton, AR., Dogan-Artun, N., Faber, ZJ., MacLeod, G., Bartels, CF., Piazza, MS., Allan, KC., Mack, SC., Wang, X., Gimple, RC., Wu, Q., Rubin, BP., Shetty, S., Angers, S., Dirks, PB., Sallari, RC., Lupien, M., Rich, JN., Scacheri, PC., "Functional Enhancers Shape Extrachromosomal Oncogene Amplifications.", Cell, 179(6):1330-1341.e13, 2019 doi:10.1016/j.cell.2019.10.039 PMID:31761532
Doh, C.Y., Li, J., Mamidi, R., Stelzer, J.E., "The HCM-causing Y235S cMyBPC mutation accelerates contractile function by altering C1 domain structure", Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease, 1865(3):661-677, 2019 doi:10.1016/j.bbadis.2019.01.007
Gulati, NM., Miyagi, M., Wiens, ME., Smith, JG., Stewart, PL., "α-Defensin HD5 Stabilizes Human Papillomavirus 16 Capsid/Core Interactions.", Pathog Immun, 4(2):196-234, 2019 doi:10.20411/pai.v4i2.314 PMID:31583330
Fourati, S., Ribeiro, S.P., Blasco Tavares Pereira Lopes, F., Talla, A., Lefebvre, F., Cameron, M., Kaewkungwal, J., Pitisuttithum, P., Nitayaphan, S., Rerks-Ngarm, S., Kim, J.H., Thomas, R., Gilbert, P.B., Tomaras, G.D., Koup, R.A., Michael, N.L., McElrath, M.J., Gottardo, R., Sékaly, R.-P., "Integrated systems approach defines the antiviral pathways conferring protection by the RV144 HIV vaccine", Nature Communications, 10(1):863, 2019 doi:10.1038/s41467-019-08854-2
Cao, A., Lindner, B., Thomas, P.J., "A Partial Differential Equation for the Mean--Return-Time Phase of Planar Stochastic Oscillators", 2019 [link] arXiv:1908.00487 [math.DS]
Giblin, J.T., Mertens, J.B., Starkman, G.D., Tian, C., "Cosmic expansion from spinning black holes", IOP Publishing, 36(19):195009, 2019 doi:http://dx.doi.org/10.1088/1361-6382/ab3bf2
Guire, E.D., Bartolo, L., Brindle, R., Devanathan, R., Dickey, E.C., Fessler, J., French, R.H., Fotheringham, U., Harmer, M., Lara-Curzio, E., Lichtner, S., Maillet, E., Mauro, J., Mecklenborg, M., Meredig, B., Rajan, K., Rickman, J., Sinnott, S., Spahr, C., Suh, C., Tandia, A., Ward, L., Weber, R., "Data-Driven Glass/Ceramic Science Research: Insights from the Glass and Ceramic and Data Science/Informatics Communities", Journal of the American Ceramic Society, 102(11):6385-6406, 2019 doi:10.1111/jace.16677
Gharaibeh, Y., Prabhu, D., Kolluru, C., Lee, J., Zimin, V., Bezerra, H., Wilson, D., "Coronary calcification segmentation in intravascular OCT images using deep learning: application to calcification scoring.", J Med Imaging (Bellingham), 6(4):045002-045002, 2019 doi:10.1117/1.JMI.6.4.045002 PMID:31903407
Peng, Y., Cao, S., Kiselar, J., Xiao, X., Du, Z., Hsieh, A., Ko, S., Chen, Y., Agrawal, P., Zheng, W., Shi, W., Jiang, W., Yang, L., Chance, M.R., Surewicz, W.K., Buck, M., Yang, S., "A Metastable Contact and Structural Disorder in the Estrogen Receptor Transactivation Domain", Structure, 27(2):229-240.e4, 2019 doi:10.1016/j.str.2018.10.026