F-J
FFTW
FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real
and complex data.
Other possible modules matches:
FFTW.MPI imkl-FFTW
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FFmpeg
A complete, cross-platform solution to record, convert and stream audio and video.
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FastQC
FastQC is a quality control application for high throughput sequence data. It reads in sequence data in a variety of formats and can either provide an
interactive application to review the results of several different QC checks, or create an HTML based report which can be integrated into a pipeline.
More information
================
- Homepage: https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
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FlexiBLAS
FlexiBLAS is a wrapper library that enables the exchange of the BLAS and LAPACK implementation used by a program without recompiling or relinking it.
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GATK
The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute to analyse next-generation resequencing data. The toolkit
offers a wide variety of tools, with a primary focus on variant discovery and genotyping as well as strong emphasis on data quality assurance. Its
robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size.
More information
================
- Homepage: https://www.broadinstitute.org/gatk/
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GCC
The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++,
libgcj,...).
Other possible modules matches:
GCCcore gcccuda
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GDAL
GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial
Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of
useful commandline utilities for data translation and processing.
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GEOS
GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS)
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GROMACS
GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of
particles. This is a GPU enabled build, containing both MPI and threadMPI builds. It also contains the gmxapi extension for the single precision MPI
build.
More information
================
- Homepage: https://www.gromacs.org
Included extensions
===================
gmxapi-0.2.0
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GSL
The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as
random number generators, special functions and least-squares fitting.
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Go
Go is an open source programming language that makes it easy to build simple, reliable, and efficient software.
Other possible modules matches:
GObject-Introspection Pango gompi gompic googletest
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Graphviz
Graphviz is open source graph visualization software. Graph visualization is a way of representing structural information as diagrams of abstract graphs
and networks. It has important applications in networking, bioinformatics, software engineering, database and web design, machine learning, and in
visual interfaces for other technical domains.
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Guile
Guile is a programming language, designed to help programmers create flexible applications that can be extended by users or other programmers with
plug-ins, modules, or scripts.
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Gurobi
The Gurobi Optimizer is a state-of-the-art solver for mathematical programming. The solvers in the Gurobi Optimizer were designed from the ground up to
exploit modern architectures and multi-core processors, using the most advanced implementations of the latest algorithms.
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HDF
HDF (also known as HDF4) is a library and multi-object file format for storing and managing data between machines.
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HDF5
HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for
flexible and efficient I/O and for high volume and complex data.
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HH-suite
The HH-suite is an open-source software package for sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs).
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HISAT2
HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) against the general human population
(as well as against a single reference genome).
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HMMER
HMMER is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods
using probabilistic models called profile hidden Markov models (profile HMMs). Compared to BLAST, FASTA, and other sequence alignment and database
search tools based on older scoring methodology, HMMER aims to be significantly more accurate and more able to detect remote homologs because of the
strength of its underlying mathematical models. In the past, this strength came at significant computational expense, but in the new HMMER3 project,
HMMER is now essentially as fast as BLAST.
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ImageMagick
ImageMagick is a software suite to create, edit, compose, or convert bitmap images
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Java
Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.
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Julia
Julia is a high-level, high-performance dynamic programming language for numerical computing
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JupyterLab
JupyterLab is the next-generation user interface for Project Jupyter offering all the familiar building blocks of the classic Jupyter Notebook
(notebook, terminal, text editor, file browser, rich outputs, etc.) in a flexible and powerful user interface. JupyterLab will eventually replace the
classic Jupyter Notebook.