Peptide Filter
This software takes as input a table containing peptides sequences and the intensity of their fragments. It computes :
- the top n fragments (n most intense ion Y, B, A)
- select the most abundant peptide based on the top n fragments
- select the x most intense fragments of the most abundant peptide
- compute the average retention time (RT) of duplicate peptides and give this RT to the most abundant peptide.
Program written by Marie TOSOLINI in 2015.
Manual
1- if not already installed, install Python free programming language
2- install the pandas
<https://pypi.python.org/pypi/pandas/0.16.2/#downloads> and numexpr
<http://www.lfd.uci.edu/%7Egohlke/pythonlibs/#numexpr> packages.
3- unzip the software
4- copy your data files in the “data” directory
5- execute the software by the command : python software_name
6- processed files are in the “results” directory.