Mine ncol vs ncol

This software computes automatically the Maximal Information-based Nonparametric Exploration (MINE) association coefficient between all columns versus all columns. Computation is based on the package minerva. (see also MINE_col1_vs_others)

Detecting Novel Associations in Large Data Sets, David N. Reshef, et al., Science 334, 1518 (2011);

Manual :

1- if not already installed, install Perl free programming language

2- install R programming language.

3- install minerva

4- install GNU parallel (GNU Linux only)

5- unzip the software and edit "conf.txt" to tune CPU load

6- copy data tsv files in the “data” directory :

DATA in columns

- first line : columns names

- first column : row names

next columns are the values, with separator TAB.

9- execute the software by the command : perl parallel_Mine-0.1.pl

10- results are in the "results" directory