Fred's Softwares

Softwares

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DATA MINING

Single-Cell Spatial Explorer

Single-Cell Signature Explorer

Single-Cell Virtual Cytometer

Single-cell Multilayer Viewer

Single-Cell Spatial Background Builder

CITE-seq-counter

AutoCompare_SES

AutoCompare ZE cmdline

Check Study Compatibility

DATABASES

DataManagement

FileFootprintLister

CompareFootprintLists

FileNameFormater

FASTA :

Fasta_split_into_files

Fasta Max length variants

Fasta Max length synonyms

Extract Fasta in list

Extract Fasta in list parallel

Extract Fasta in list parallel GO

Fasta file composition

Extract sequences in chromosome

Micro Arrays

Reorganize genes synonyms (for Affymetrix microarray)

Collapse microarray

Pvalue and fold change calculation

Log2 transformation

PROTEOMICS and MS :

Extract Fasta in list

Extract Fasta in list parallel

ETD/CID inclusion list

Protein Fold Change

Select most abundant peptides

Sort Protein Groups

STATISTICS / MATHEMATICS

ROC curves merge

correlations

Correlation by lines

Correlation by lines in list

Correlation by lines in list Pearson Spearman

Correlation by columns

MINE_col1_vs_others

Mine ncol vs ncol

cosine similarity in list

cosine similarity parallel

regression

Linear Regression

Theil-Sen regression

plots

Interactive Scatter Plot

Scatter plot by cols interactive

Count dots in 2D plot

statistical tests

Wilkoxon and T-test

Pvalue and fold change calculation

Benjamini Hochberg

normalisation

Normalize files means

Quantile normalization

Normalize tables

Normalize table by ISTD

Equations/Integration

Log2 transformation

Solve equation f(x)=0

Integration (AUC)

Tasks Automation

Parallel Files Processing

Command line builder

Others

FileFootprintLister

TABLES TOOLS :

Merging tools

Merge col1 + col2

Merge two tables

Merge Files Vertically

Merge tables SQLite

Concatenate n tables

Insert lines in files

Find / explore

Find keyword in table

Look inside file

Look inside table

Reshape

Add column category with filename

Create sublists according to numerical values

Duplicate rows by synonyms

Extract Columns

Find title line in table

Lines in One Column

Merge Duplicates by rows

Randomize tables by_rows

Randomize tables compiled

Remove columns by regexp

Remove comment lines

Remove duplicates

Remove empty lines

Remove lines by regexp

Remove comment lines

Rename columns append filename

Rename columns with filename

Select columns in table

Select columns by regexp

Select lines by sums

Select lines in table

Select lines by Regex in table Julia

Skip lines in header

Skip lines until

Split table by lines blocks

Split table columns

Split table into sub-tables

Split table lines

Split_table_vertically

Transpose tables

Two_columns_table

Change values

Log2 transformation

Mean_by_factors

Normalize files means

Normalize table to col sum value

Normalize tables

Pvalue and fold change calculation

Rank Tables by cols

Replace cells in list

Replace first delimiter in tables

Replace strings in list

Replace words in list

search replace word

Files Tools

FILES COMPARISON

nwCompare - Julia

nwCompare - num

FILES MANIPULATION

Copy Files in List

search replace word

Rename files with list

Rename table with one colname

FILES CONVERTERS

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