Fasta Cutter
This software cuts Fasta sequences into pieces. The overlap between sequences is tuned with the offset parameter.
Manual :
1- install Perl free programming language and GNU parallel.
2- unzip the software
3- copy your Fasta files in the “fasta” directory.
5- edit config.txt to set the length of the sub-sequences, the offset and number of CPUs for parallel processing.
6- execute the software by the command : perl parallel_fasta_cutter-0.1.pl
7- processed files are in the “results” directory.
To avoid duplicates, the software add a number to the sequences ID.