Databases

Here we provide databases of HUMAN (28807 pathways), MOUSE, RAT, ZEBRA FISH, MACACA  genes that can be used with AutoCompare ZE, AutoCompare_SES, Single-Cell Signature Explorer.  

Please note that these softwares require only one level of directories inside the "databases" folder. For example : databases/C2_CP_KEGG/

If some databases have an additional level of subfolder, they should not be copied without removing the parent folder. 

Last update : 2024-08-28 : MSigDB  and reactome pathways have been updated

Last update : 2024-02-07 : MSigDB  and reactome pathways have been updated

Last update : 2023-04-13 : MSigDB  and reactome pathways have been updated

Last update : 2022-09-28 : MSigDB  and reactome pathways have been updated

Last update : 2022-02-14 : Reactome pathways have been updated. 7 new pathway and special character "-->" was removed in one pathway label

Last update : 2022-01-26 : MSigDB and reactome pathways have been updated

Credits for MSigDB : 

Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles

Proc Natl Acad Sci U S A. 2005 Oct 25;102(43):15545-50

Credits for Reactome (2022-01) :

The Reactome pathway Knowledgebase. Nucleic Acids Res. 2016 Jan 4;44(D1):D481-7